4.8 Article

Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

A large-scale binding and functional map of human RNA-binding proteins

Eric L. Van Nostrand et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

Christopher S. McGinnis et al.

CELL SYSTEMS (2019)

Article Biochemistry & Molecular Biology

Comprehensive Integration of Single-Cell Data

Tim Stuart et al.

Article Cell & Tissue Engineering

Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development

Cleber A. Trujillo et al.

CELL STEM CELL (2019)

Article Biochemical Research Methods

Fast, sensitive and accurate integration of single-cell data with Harmony

Ilya Korsunsky et al.

NATURE METHODS (2019)

Article Biochemical Research Methods

snpAD: an ancient DNA genotype caller

Kay Pruefer

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

Synaptic activity induces input-specific rearrangements in a targeted synaptic protein interaction network

Jonathan D. Lautz et al.

JOURNAL OF NEUROCHEMISTRY (2018)

Article Biochemistry & Molecular Biology

p53 inhibits CRISPR-Cas9 engineering in human pluripotent stem cells

Robert J. Ihry et al.

NATURE MEDICINE (2018)

Article Biochemistry & Molecular Biology

CRISPR-Cas9 genome editing induces a p53-mediated DNA damage response

Emma Haapaniemi et al.

NATURE MEDICINE (2018)

Review Neurosciences

SHANK proteins: roles at the synapse and in autism spectrum disorder

Patricia Monteiro et al.

NATURE REVIEWS NEUROSCIENCE (2017)

Article Multidisciplinary Sciences

A high-coverage Neandertal genome from Vindija Cave in Croatia

Kay Pruefer et al.

SCIENCE (2017)

Article Biochemistry & Molecular Biology

ClinVar: public archive of interpretations of clinically relevant variants

Melissa J. Landrum et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex

Xiaochang Zhang et al.

Article Multidisciplinary Sciences

Genome-wide changes in lncRNA, splicing, and regional gene expression patterns in autism

Neelroop N. Parikshak et al.

NATURE (2016)

Article Multidisciplinary Sciences

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

Swapan Mallick et al.

NATURE (2016)

Article Biochemical Research Methods

Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)

Eric L. Van Nostrand et al.

NATURE METHODS (2016)

Article Biochemistry & Molecular Biology

Multiplex matrix network analysis of protein complexes in the human TCR signalosome

Stephen E. P. Smith et al.

SCIENCE SIGNALING (2016)

Article Multidisciplinary Sciences

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Benjamin Lacar et al.

NATURE COMMUNICATIONS (2016)

Article Genetics & Heredity

The Strength of Selection against Neanderthal Introgression

Ivan Juric et al.

PLOS GENETICS (2016)

Article Biochemistry & Molecular Biology

Multiplex matrix network analysis of protein complexes in the human TCR signalosome

Stephen E. P. Smith et al.

SCIENCE SIGNALING (2016)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Article Biochemical Research Methods

SpeedSeq: ultra-fast personal genome analysis and interpretation

Colby Chiang et al.

NATURE METHODS (2015)

Review Genetics & Heredity

Evidence for archaic adaptive introgression in humans

Fernando Racimo et al.

NATURE REVIEWS GENETICS (2015)

Article Anatomy & Morphology

Lhx5 controls mamillary differentiation in the developing hypothalamus of the mouse

Michael Heide et al.

FRONTIERS IN NEUROANATOMY (2015)

Article Biochemistry & Molecular Biology

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

Simone Picelli et al.

GENOME RESEARCH (2014)

Article Multidisciplinary Sciences

The complete genome sequence of a Neanderthal from the Altai Mountains

Kay Pruefer et al.

NATURE (2014)

Article Multidisciplinary Sciences

The genomic landscape of Neanderthal ancestry in present-day humans

Sriram Sankararaman et al.

NATURE (2014)

Article Biochemical Research Methods

Full-length RNA-seq from single cells using Smart-seq2

Simone Picelli et al.

NATURE PROTOCOLS (2014)

Article Multidisciplinary Sciences

Resurrecting Surviving Neandertal Lineages from Modern Human Genomes

Benjamin Vernot et al.

SCIENCE (2014)

Article Cell Biology

NPTX1 Regulates Neural Lineage Specification from Human Pluripotent Stem Cells

Nathan C. Boles et al.

CELL REPORTS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

Michael T. Lovci et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Article Biochemistry & Molecular Biology

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow et al.

GENOME RESEARCH (2012)

Article Biochemical Research Methods

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

Matthias Meyer et al.

SCIENCE (2012)

Article Biochemistry & Molecular Biology

Conservation of an RNA regulatory map between Drosophila and mammals

Angela N. Brooks et al.

GENOME RESEARCH (2011)

Article Multidisciplinary Sciences

The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans

Laurent Abi-Rached et al.

SCIENCE (2011)

Article Biochemistry & Molecular Biology

Protein-RNA and Protein-Protein Recognition by Dual KH1/2 Domains of the Neuronal Splicing Factor Nova-1

Marianna Teplova et al.

STRUCTURE (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

A map of human genome variation from population-scale sequencing

David Altshuler et al.

NATURE (2010)

Article Multidisciplinary Sciences

A Draft Sequence of the Neandertal Genome

Richard E. Green et al.

SCIENCE (2010)

Article Cell & Tissue Engineering

Neuronatin Promotes Neural Lineage in ESCs Via Ca2+ Signaling

Hsuan-Hwai Lin et al.

STEM CELLS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Cell Biology

Formation and patterning of the forebrain and olfactory system by zinc-finger genes Fezf1 and Fezf2

Takeshi Shimizu et al.

DEVELOPMENT GROWTH & DIFFERENTIATION (2009)

Article Biochemical Research Methods

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder et al.

BMC BIOINFORMATICS (2008)

Article Genetics & Heredity

Pax6 3′ deletion results in aniridia, autism and mental retardation

L. K. Davis et al.

HUMAN GENETICS (2008)

Article Genetics & Heredity

Evolution of nova-dependent splicing regulation in the brain

Nejc Jelen et al.

PLOS GENETICS (2007)

Article Biochemical Research Methods

FUNC:: a package for detecting significant associations between gene sets and ontological annotations

Kay Pruefer et al.

BMC BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

An RNA map predicting Nova-dependent splicing regulation

Jernej Ule et al.

NATURE (2006)

Review Neurosciences

Homer proteins: implications for neuropsychiatric disorders

Karen K. Szumlinski et al.

CURRENT OPINION IN NEUROBIOLOGY (2006)

Article Genetics & Heredity

Nova regulates brain-specific splicing to shape the synapse

J Ule et al.

NATURE GENETICS (2005)

Article Biochemistry & Molecular Biology

The human genome browser at UCSC

WJ Kent et al.

GENOME RESEARCH (2002)

Article Statistics & Probability

Estimating the number of clusters in a data set via the gap statistic

R Tibshirani et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2001)