Related references
Note: Only part of the references are listed.Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean
Kevin W. Becker et al.
ISME JOURNAL (2021)
Interconnection of the Antenna Pigment 8-HDF and Flavin Facilitates Red-Light Reception in a Bifunctional Animal-like Cryptochrome
Sabine Oldemeyer et al.
BIOCHEMISTRY (2020)
The brown clock: circadian rhythms in stramenopiles
Eva M. Farre
PHYSIOLOGIA PLANTARUM (2020)
Diel variability of bulk optical properties associated with the growth and division of small phytoplankton in the North Pacific Subtropical Gyre
Fernanda Henderikx Freitas et al.
APPLIED OPTICS (2020)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection
B. C. Kolody et al.
ISME JOURNAL (2019)
bHLH-PAS protein RITMO1 regulates diel biological rhythms in the marine diatom Phaeodactylum tricornutum
Rossella Annunziata et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Discovery of a kleptoplastic 'dinotom' dinoflagellate and the unique nuclear dynamics of converting kleptoplastids to permanent plastids
Norico Yamada et al.
SCIENTIFIC REPORTS (2019)
Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean
Bryndan P. Durham et al.
NATURE MICROBIOLOGY (2019)
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
David M. Needham et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
SeaFlow data v1, high-resolution abundance, size and biomass of small phytoplankton in the North Pacific
Francois Ribalet et al.
SCIENTIFIC DATA (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
Sarah K. Hu et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre
Daniel K. Olson et al.
ISME JOURNAL (2018)
Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii
Sophie Franz et al.
NUCLEIC ACIDS RESEARCH (2018)
Clustering huge protein sequence sets in linear time
Martin Steinegger et al.
NATURE COMMUNICATIONS (2018)
A distinct abundant group of microbial rhodopsins discovered using functional metagenomics
Alina Pushkarev et al.
NATURE (2018)
Directly light-regulated binding of RGS-LOV photoreceptors to anionic membrane phospholipids
Spencer T. Glantz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean
Kevin W. Becker et al.
NATURE COMMUNICATIONS (2018)
A Hard Day's Night: Diel Shifts in Microbial Eukaryotic Activity in the North Pacific Subtropical Gyre
Sarah K. Hu et al.
FRONTIERS IN MARINE SCIENCE (2018)
Translation and Translational Control in Dinoflagellates
Sougata Roy et al.
MICROORGANISMS (2018)
Distribution of phytoplankton groups within the deep chlorophyll maximum
Mikel Latasa et al.
LIMNOLOGY AND OCEANOGRAPHY (2017)
Probing the evolution, ecology and physiology of marine protists using transcriptomics
David A. Caron et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Cryptochrome photoreceptors in green algae: Unexpected versatility of mechanisms and functions
Tilman Kottke et al.
JOURNAL OF PLANT PHYSIOLOGY (2017)
The Influence of a Cryptochrome on the Gene Expression Profile in the Diatom Phaeodactylum tricornutum under Blue Light and in Darkness
Sarah Koenig et al.
PLANT AND CELL PHYSIOLOGY (2017)
Targeting of Photoreceptor Genes in Chlamydomonas reinhardtii via Zinc-Finger Nucleases and CRISPR/Cas9
Andre Greiner et al.
PLANT CELL (2017)
A Plant Cryptochrome Controls Key Features of the Chlamydomonas Circadian Clock and Its Life Cycl
Nico Mueller et al.
PLANT PHYSIOLOGY (2017)
Diel cycling and long-term persistence of viruses in the ocean's euphotic zone
Frank O. Aylward et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera
Samuel T. Wilson et al.
NATURE MICROBIOLOGY (2017)
Analysis of carotenogenic genes promoters and WRKY transcription factors in response to salt stress in Dunaliella bardawil
Ming-Hua Liang et al.
Scientific Reports (2017)
The NHR domains of Neuralized and related proteins: Beyond Notch signalling
Sili Liu et al.
CELLULAR SIGNALLING (2017)
Ubiquitous distribution of helmchrome in phototactic swarmers of the stramenopiles
Gang Fu et al.
PROTOPLASMA (2016)
Vertical distribution of major photosynthetic picoeukaryotic groups in stratified marine waters
Ana M. Cabello et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
TransRate: reference-free quality assessment of de novo transcriptome assemblies
Richard Smith-Unna et al.
GENOME RESEARCH (2016)
Photoreception in Phytoplankton
Nansi Jo Colley et al.
INTEGRATIVE AND COMPARATIVE BIOLOGY (2016)
Allosteric communication between DNA-binding and light-responsive domains of diatom class I aureochromes
Ankan Banerjee et al.
NUCLEIC ACIDS RESEARCH (2016)
Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean
Antonio Emidio Fortunato et al.
PLANT CELL (2016)
Functional and topological diversity of LOV domain photoreceptors
Spencer T. Glantz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Cell Size as a Key Determinant of Phytoplankton Metabolism and Community Structure
Emilio Maranon
ANNUAL REVIEW OF MARINE SCIENCE, VOL 7 (2015)
Dealing with light: The widespread and multitasking cryptochrome/photolyase family in photosynthetic organisms
Antonio Emidio Fortunato et al.
JOURNAL OF PLANT PHYSIOLOGY (2015)
High-level expression and phosphorylation of phytochrome B modulates flowering time in Arabidopsis
Anita Hajdu et al.
PLANT JOURNAL (2015)
Microbial community transcriptional networks are conserved in three domains at ocean basin scales
Frank O. Aylward et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean
Harriet Alexander et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Signal transduction in light-oxygen-voltage receptors lacking the adduct-forming cysteine residue
Estella F. Yee et al.
NATURE COMMUNICATIONS (2015)
Rhodopsin gene expression regulated by the light dark cycle, light spectrum and light intensity in the dinoflagellate Prorocentrum
Xinguo Shi et al.
FRONTIERS IN MICROBIOLOGY (2015)
Probing entrainment of Ostreococcus tauri circadian clock by green and blue light through a mathematical modeling approach
Quentin Thommen et al.
FRONTIERS IN GENETICS (2015)
Clocks in Algae
Zeenat B. Noordally et al.
BIOCHEMISTRY (2015)
CDD: NCBI's conserved domain database
Aron Marchler-Bauer et al.
NUCLEIC ACIDS RESEARCH (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring
Ines Wagner et al.
BMC BIOINFORMATICS (2014)
Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
Oliver P. Ernst et al.
CHEMICAL REVIEWS (2014)
XSEDE: Accelerating Scientific Discovery
John Towns et al.
COMPUTING IN SCIENCE & ENGINEERING (2014)
Detecting Rhythms in Time Series with RAIN
Paul F. Thaben et al.
JOURNAL OF BIOLOGICAL RHYTHMS (2014)
Evaluation of the utility of xanthophyll cycle pigment dynamics for assessing upper ocean mixing processes at Station ALOHA
Robert R. Bidigare et al.
JOURNAL OF PLANKTON RESEARCH (2014)
The Cryptochrome/Photolyase Family in aquatic organisms
Paola Oliveri et al.
MARINE GENOMICS (2014)
Strengths and Limitations of Period Estimation Methods for Circadian Data
Tomasz Zielinski et al.
PLOS ONE (2014)
Eukaryotic algal phytochromes span the visible spectrum
Nathan C. Rockwell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Proteomics Analysis of Heterogeneous Flagella in Brown Algae (Stramenopiles)
Gang Fu et al.
PROTIST (2014)
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling et al.
PLOS BIOLOGY (2014)
Light-Dependent Functions of the Fusarium fujikuroi CryD DASH Cryptochrome in Development and Secondary Metabolism
Marta Castrillo et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
AUREOCHROME1a-Mediated Induction of the Diatom-Specific Cyclin dsCYC2 Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)
Marie J. J. Huysman et al.
PLANT CELL (2013)
Aureochrome 1a Is Involved in the Photoacclimation of the Diatom Phaeodactylum tricornutum
Benjamin Schellenberger Costa et al.
PLOS ONE (2013)
Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana
Justin Ashworth et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
Jonas Collen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Pattern and synchrony of gene expression among sympatric marine microbial populations
Elizabeth A. Ottesen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
Andre J. Aberer et al.
SYSTEMATIC BIOLOGY (2013)
Grinder: a versatile amplicon and shotgun sequence simulator
Florent E. Angly et al.
NUCLEIC ACIDS RESEARCH (2012)
ProtTest 3: fast selection of best-fit models of protein evolution
Diego Darriba et al.
BIOINFORMATICS (2011)
Post-transcriptional control of circadian rhythms
Shihoko Kojima et al.
JOURNAL OF CELL SCIENCE (2011)
SeaFlow: A novel underway flow-cytometer for continuous observations of phytoplankton in the ocean
Jarred E. Swalwell et al.
LIMNOLOGY AND OCEANOGRAPHY-METHODS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
A eukaryotic LOV-histidine kinase with circadian clock function in the picoalga Ostreococcus
El-Batoul Djouani-Tahri et al.
PLANT JOURNAL (2011)
A bacterial proteorhodopsin proton pump in marine eukaryotes
Claudio H. Slamovits et al.
NATURE COMMUNICATIONS (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Frederick A. Matsen et al.
BMC BIOINFORMATICS (2010)
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes
Marc Heijde et al.
PLANT CELL AND ENVIRONMENT (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Giant virus with a remarkable complement of genes infects marine zooplankton
Matthias G. Fischer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
phyloXML: XML for evolutionary biology and comparative genomics
Mira V. Han et al.
BMC BIOINFORMATICS (2009)
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity
Sacha Coesel et al.
EMBO REPORTS (2009)
Phytochrome dependent quantitative control of Hd3a transcription is the basis of the night break effect in rice flowering
Ryo Ishikawa et al.
GENES & GENETIC SYSTEMS (2009)
Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life
Ulrich Krauss et al.
JOURNAL OF BACTERIOLOGY (2009)
The life of diatoms in the world's oceans
E. Virginia Armbrust
NATURE (2009)
Channelrhodopsins of Volvox carteri Are Photochromic Proteins That Are Specifically Expressed in Somatic Cells under Control of Light, Temperature, and the Sex Inducer
Arash Kianianmomeni et al.
PLANT PHYSIOLOGY (2009)
Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes
Mie Ishikawa et al.
PLANTA (2009)
AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles
Fumio Takahashi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping
Behzad Imanian et al.
BMC EVOLUTIONARY BIOLOGY (2007)
ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light
Woe-Yeon Kim et al.
NATURE (2007)
Spliced leader RNA trans-splicing in dinoflagellates
Huan Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The multitalented microbial sensory rhodopsins
John L. Spudich
TRENDS IN MICROBIOLOGY (2006)
Microbial rhodopsins: functional versatility and genetic mobility
Adrian K. Sharma et al.
TRENDS IN MICROBIOLOGY (2006)
CRY-DASH gene expression is under the control of the circadian clock machinery in tomato
Paolo Facella et al.
FEBS LETTERS (2006)
Rhodopsin-mediated photoreception in cryptophyte flagellates
OA Sineshchekov et al.
BIOPHYSICAL JOURNAL (2005)
Circadian clocks - the fall and rise of physiology
T Roenneberg et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
The CPH1 gene of Chlamydomonas reinhardtii encodes two forms of cryptochrome whose levels are controlled by light-induced proteolysis
NA Reisdorph et al.
PLANT PHYSIOLOGY (2004)
Mixed layer depth over the global ocean:: An examination of profile data and a profile-based climatology -: art. no. C12003
C de Boyer Montégut et al.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS (2004)
The evolution of modern eukaryotic phytoplankton
PG Falkowski et al.
SCIENCE (2004)
Diversification and spectral tuning in marine proteorhodopsins
DL Man et al.
EMBO JOURNAL (2003)
The coevolution of blue-light photoreception and circadian rhythms
W Gehring et al.
JOURNAL OF MOLECULAR EVOLUTION (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii
OA Sineshchekov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Phototropins 1 and 2: versatile plant blue-light receptors
WR Briggs et al.
TRENDS IN PLANT SCIENCE (2002)
Flagellar protein dynamics in Chlamydomonas
L Song et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Fowlpox virus encodes a novel DNA repair enzyme, CPD-photolyase, that restores infectivity of UV light-damaged virus
V Srinivasan et al.
JOURNAL OF VIROLOGY (2001)