Related references
Note: Only part of the references are listed.Chromosome organization in bacteria: mechanistic insights into genome structure and function
Remus T. Dame et al.
NATURE REVIEWS GENETICS (2020)
Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells
Charlene Planchenault et al.
JOURNAL OF MOLECULAR BIOLOGY (2020)
SciPy 1.0: fundamental algorithms for scientific computing in Python
Pauli Virtanen et al.
NATURE METHODS (2020)
High-Resolution Mapping of the Escherichia coli Chromosome Reveals Positions of High and Low Transcription
Scott A. Scholz et al.
CELL SYSTEMS (2019)
Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes
Ahmed Abbas et al.
NATURE COMMUNICATIONS (2019)
Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins
Virginia S. Lioy et al.
CELL (2018)
Lattice Models of Bacterial Nucleoids
David S. Goodsell et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2018)
High-resolution 3D models of Caulobacter crescentus chromosome reveal genome structural variability and organization
Asli Yildirim et al.
NUCLEIC ACIDS RESEARCH (2018)
Interphase human chromosome exhibits out of equilibrium glassy dynamics
Guang Shi et al.
NATURE COMMUNICATIONS (2018)
Impact of Chromosomal Architecture on the Function and Evolution of Bacterial Genomes
Thoger J. Krogh et al.
FRONTIERS IN MICROBIOLOGY (2018)
A Polymer Model for the Quantitative Reconstruction of Chromosome Architecture from HiC and GAM Data
Guillaume Le Treut et al.
BIOPHYSICAL JOURNAL (2018)
Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci
Lei Liu et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome
William C. Hacker et al.
NUCLEIC ACIDS RESEARCH (2017)
Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae
Marie Trussart et al.
NATURE COMMUNICATIONS (2017)
Transferable model for chromosome architecture
Michele Di Pierro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid
Mathew Stracy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The bacterial nucleoid: nature, dynamics and sister segregation
Nancy Kleckner et al.
CURRENT OPINION IN MICROBIOLOGY (2014)
3D genome reconstruction from chromosomal contacts
Annick Lesne et al.
NATURE METHODS (2014)
Four-Dimensional Imaging of E. coli Nucleoid Organization and Dynamics in Living Cells
Jay K. Fisher et al.
CELL (2013)
Modelling of crowded polymers elucidate effects of double-strand breaks in topological domains of bacterial chromosomes
Julien Dorier et al.
NUCLEIC ACIDS RESEARCH (2013)
Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription
Cedric Cagliero et al.
NUCLEIC ACIDS RESEARCH (2013)
Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization
Chris A. Brackley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome
Tung B. K. Le et al.
SCIENCE (2013)
Normalization of a chromosomal contact map
Axel Cournac et al.
BMC GENOMICS (2012)
Bacterial chromosome segregation
Christophe Possoz et al.
FRONTIERS IN BIOSCIENCE-LANDMARK (2012)
Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
Nastaran Hadizadeh Yazdi et al.
MOLECULAR MICROBIOLOGY (2012)
Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells
Somenath Bakshi et al.
MOLECULAR MICROBIOLOGY (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation
Miriam Fritsche et al.
NUCLEIC ACIDS RESEARCH (2012)
Entropy-Based Mechanism of Ribosome-Nucleoid Segregation in E. coli Cells
Jagannath Mondal et al.
BIOPHYSICAL JOURNAL (2011)
The fractal globule as a model of chromatin architecture in the cell
Leonid A. Mirny
CHROMOSOME RESEARCH (2011)
The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation
Mark A. Umbarger et al.
MOLECULAR CELL (2011)
Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling
Benjamin Volkmer et al.
PLOS ONE (2011)
Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament
Paul A. Wiggins et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Chromosome Driven Spatial Patterning of Proteins in Bacteria
Saeed Saberi et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
The MatP/matS Site-Specific System Organizes the Terminus Region of the E-coli Chromosome into a Macrodomain
Romain Mercier et al.
CELL (2008)
DNA dynamics vary according to macrodomain topography in the E-coli chromosome
Olivier Espeli et al.
MOLECULAR MICROBIOLOGY (2008)
Timing the start of division in E-coli: a single-cell study
G. Reshes et al.
PHYSICAL BIOLOGY (2008)
The three-dimensional structure of human interphase chromosomes is related to the transcriptome map
Sandra Goetze et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Active transcription of rRNA operons is a driving force for the distribution of RNA polymerase in bacteria: Effect of extrachromosomal copies of rrnB on the in vivo localization of RNA polymerase
Julio E. Cabrera et al.
JOURNAL OF BACTERIOLOGY (2006)
Macrodomain organization of the Escherichia coli chromosome
M Valens et al.
EMBO JOURNAL (2004)
Macroscopic modeling and simulations of supercoiled DNA with bound proteins
J Huang et al.
JOURNAL OF CHEMICAL PHYSICS (2002)
Polar localization of the Escherichia coli oriC region is independent of the site of replication initiation
GS Gordon et al.
MOLECULAR MICROBIOLOGY (2002)
Share Paper
