4.6 Review

Enabling sustainable agriculture through understanding and enhancement of microbiomes

Journal

NEW PHYTOLOGIST
Volume 230, Issue 6, Pages 2129-2147

Publisher

WILEY
DOI: 10.1111/nph.17319

Keywords

agricultural microbiome; biopesticides; culturomics; multiomic technologies; phytobiome; synthetic communities

Categories

Funding

  1. Colorado Agricultural Experiment Station
  2. US National Science Foundation [1714276, 5344165]
  3. US Department of Agriculture, National Institute of Food and Agriculture [2018-67013-28490, 2020-70029-33199, 2020-67013-31801]
  4. International Alliance for Phytobiomes Research
  5. Division Of Integrative Organismal Systems
  6. Direct For Biological Sciences [1714276] Funding Source: National Science Foundation

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Harnessing plant-associated microbiomes is a crucial strategy for sustainable agricultural production, but challenges remain in commercialization of microbial-based products. Translating microbiome knowledge into real-world applications will require interdisciplinary research and training the next generation of scientists.
Harnessing plant-associated microbiomes offers an invaluable strategy to help agricultural production become more sustainable while also meeting growing demands for food, feed and fiber. A plethora of interconnected interactions among the host, environment and microbes, occurring both above and below ground, drive recognition, recruitment and colonization of plant-associated microbes, resulting in activation of downstream host responses and functionality. Dissecting these complex interactions by integrating multiomic approaches, high-throughput culturing, and computational and synthetic biology advances is providing deeper understanding of the structure and function of native microbial communities. Such insights are paving the way towards development of microbial products as well as microbiomes engineered with synthetic microbial communities capable of delivering agronomic solutions. While there is a growing market for microbial-based solutions to improve crop productivity, challenges with commercialization of these products remain. The continued translation of plant-associated microbiome knowledge into real-world scenarios will require concerted transdisciplinary research, cross-training of a next generation of scientists, and targeted educational efforts to prime growers and the general public for successful adoption of these innovative technologies.

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