4.6 Article

EasyMAP: A user-friendly online platform for analyzing 16S ribosomal DNA sequencing data

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

The effect of 16S rRNA region choice on bacterial community metabarcoding results

Yu. S. Bukin et al.

SCIENTIFIC DATA (2019)

Letter Biotechnology & Applied Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemistry & Molecular Biology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

Enis Afgan et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Microbial metagenome of urinary tract infection

Ahmed Moustafa et al.

SCIENTIFIC REPORTS (2018)

Article Biochemistry & Molecular Biology

Gut microbiome transition across a lifestyle gradient in Himalaya

Aashish R. Jha et al.

PLOS BIOLOGY (2018)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

PEERJ (2016)

Article Biochemical Research Methods

VAMPS: a website for visualization and analysis of microbial population structures

Susan M. Huse et al.

BMC BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Soil Science

Manipulating the soil microbiome to increase soil health and plant fertility

Jacqueline M. Chaparro et al.

BIOLOGY AND FERTILITY OF SOILS (2012)

Article Biochemical Research Methods

Denoising PCR-amplified metagenome data

Michael J. Rosen et al.

BMC BIOINFORMATICS (2012)

Article Biotechnology & Applied Microbiology

Metagenomic biomarker discovery and explanation

Nicola Segata et al.

GENOME BIOLOGY (2011)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

The Human Microbiome Project

Peter J. Turnbaugh et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)