4.7 Review

Improving the reliability of eDNA data interpretation

Related references

Note: Only part of the references are listed.
Article Environmental Sciences

Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding

Naiara Guimaraes Sales et al.

Summary: This study evaluated the potential of environmental DNA (eDNA) metabarcoding for assessing fish communities in the Jequitinhonha River catchment in Brazil. The results revealed spatio-temporal changes, unrecorded biodiversity components, and potential anthropogenic impacts on fish assemblages. Differences in species richness before and after major rain events were observed, as well as the potential impact of dams on local fish diversity.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Environmental Sciences

Seasonality, DNA degradation and spatial heterogeneity as drivers of eDNA detection dynamics

Christopher R. Troth et al.

Summary: In this study, we found that the concentrations of environmental DNA are influenced by seasonal variability, degradation rates, and micro-habitat heterogeneity, which can result in uncertainties in across-site and time comparisons using environmental DNA.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Environmental Sciences

Release and degradation of environmental DNA and RNA in a marine system

Susanna A. Wood et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2020)

Review Ecology

From eDNA to citizen science: emerging tools for the early detection of invasive species

Eric R. Larson et al.

FRONTIERS IN ECOLOGY AND THE ENVIRONMENT (2020)

Article Statistics & Probability

Modelling environmental DNA data; Bayesian variable selection accounting for false positive and false negative errors

Jim E. Griffin et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS (2020)

Article Biodiversity Conservation

Use of ambiguous detections to improve estimates from species distribution models

Julie Louvrier et al.

CONSERVATION BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Conditionally autoregressive models improve occupancy analyses of autocorrelated data: An example with environmental DNA

Wentao Chen et al.

MOLECULAR ECOLOGY RESOURCES (2019)

Article Biodiversity Conservation

Spatially explicit species distribution models: A missed opportunity in conservation planning?

Sami Domisch et al.

DIVERSITY AND DISTRIBUTIONS (2019)

Article Ecology

The recent past and promising future for data integration methods to estimate species' distributions

David A. W. Miller et al.

METHODS IN ECOLOGY AND EVOLUTION (2019)

Editorial Material Biochemistry & Molecular Biology

DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions

Lucie Zinger et al.

MOLECULAR ECOLOGY (2019)

Article Biochemistry & Molecular Biology

Assessing the influence of sample tagging and library preparation on DNA metabarcoding

Vera M. A. Zizka et al.

MOLECULAR ECOLOGY RESOURCES (2019)

Article Biochemistry & Molecular Biology

ednaoccupancy: An r package for multiscale occupancy modelling of environmental DNA data

Robert M. Dorazio et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Biochemistry & Molecular Biology

The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding

Jianlong Li et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Biochemistry & Molecular Biology

A model-based solution for observational errors in laboratory studies

Brian M. Brost et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Review Ecology

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

Melania E. Cristescu et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49 (2018)

Article Biology

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

Mathew Seymour et al.

COMMUNICATIONS BIOLOGY (2018)

Article Environmental Sciences

Making sense of the noise: The effect of hydrology on silver carp eDNA detection in the Chicago area waterway system

Jeffery W. Song et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2017)

Article Multidisciplinary Sciences

Seasonal variation in environmental DNA in relation to population size and environmental factors

Andrew S. Buxton et al.

SCIENTIFIC REPORTS (2017)

Article Ecology

Dealing with false-positive and false-negative errors about species occurrence at multiple levels

Gurutzeta Guillera-Arroita et al.

METHODS IN ECOLOGY AND EVOLUTION (2017)

Article Biochemistry & Molecular Biology

Statistical approaches to account for false-positive errors in environmental DNA samples

Jose J. Lahoz-Monfort et al.

MOLECULAR ECOLOGY RESOURCES (2016)

News Item Biochemistry & Molecular Biology

How to limit false positives in environmental DNA and metabarcoding?

Gentile Francesco Ficetola et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Review Ecology

Critical considerations for the application of environmental DNA methods to detect aquatic species

Caren S. Goldberg et al.

METHODS IN ECOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

Ida Baerholm Schnell et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Statistics & Probability

SSN: AnRPackage for Spatial Statistical Modeling on Stream Networks

Jay M. Ver Hoef et al.

Journal of Statistical Software (2015)

Article Biochemistry & Molecular Biology

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

Gentile F. Ficetola et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Ecology

Advances and applications of occupancymodels

Larissa L. Bailey et al.

METHODS IN ECOLOGY AND EVOLUTION (2014)

Article Biodiversity Conservation

Species distribution modelling and imperfect detection: comparing occupancy versus consensus methods

Lise Comte et al.

DIVERSITY AND DISTRIBUTIONS (2013)

Article Multidisciplinary Sciences

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

Taylor M. Wilcox et al.

PLOS ONE (2013)

Article Statistics & Probability

A Moving Average Approach for Spatial Statistical Models of Stream Networks

Jay M. Ver Hoef et al.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2010)

Article Biodiversity Conservation

Occupancy estimation and the closure assumption

Christopher T. Rota et al.

JOURNAL OF APPLIED ECOLOGY (2009)

Article Ecology

Building statistical models to analyze species distributions

AM Latimer et al.

ECOLOGICAL APPLICATIONS (2006)

Article Biodiversity Conservation

Designing occupancy studies: general advice and allocating survey effort

DI Mackenzie et al.

JOURNAL OF APPLIED ECOLOGY (2005)