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Engineered bacteria to report gut function: technologies and implementation

Journal

CURRENT OPINION IN MICROBIOLOGY
Volume 59, Issue -, Pages 24-33

Publisher

CURRENT BIOLOGY LTD
DOI: 10.1016/j.mib.2020.07.014

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Funding

  1. Botnar Research Centre for Child Health Multi-Investigator Project
  2. European Research Council [851021]
  3. EMBO Young Investigator Program [4217]
  4. Swiss National Science Foundation [31003A_175830]
  5. ETH domain Personalized Health and Related Technologies [PHRT-203]
  6. National Centers of Competence - Molecular Systems Engineering
  7. ETH Zurich [ETH-27 18-2]
  8. Swiss National Science Foundation (SNF) [31003A_175830] Funding Source: Swiss National Science Foundation (SNF)
  9. European Research Council (ERC) [851021] Funding Source: European Research Council (ERC)

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Advances in synthetic biology and microbiology have led to engineered bacteria which can sense and report on signals of interest, particularly in the context of the gut microbiota. These bacterial biosensors offer non-invasive monitoring capabilities for biomolecules in human health and disease settings.
Advances in synthetic biology and microbiology have enabled the creation of engineered bacteria which can sense and report on intracellular and extracellular signals. When deployed in vivo these whole-cell bacterial biosensors can act as sentinels to monitor biomolecules of interest in human health and disease settings. This is particularly interesting in the context of the gut microbiota, which interacts extensively with the human host throughout time and transit of the gut and can be accessed from feces without requiring invasive collection. Leveraging rational engineering approaches for genetic circuits as well as an expanding catalog of disease-associated biomarkers, bacterial biosensors can act as non-invasive and easy-tomonitor reporters of the gut. Here, we summarize recent engineering approaches applied in vivo in animal models and then highlight promising technologies for designing the next generation of bacterial biosensors.

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