4.8 Article

Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection

Related references

Note: Only part of the references are listed.
Review Biotechnology & Applied Microbiology

Base editing in crops: current advances, limitations and future implications

Rukmini Mishra et al.

PLANT BIOTECHNOLOGY JOURNAL (2020)

Article Biochemistry & Molecular Biology

A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form

Zhongjuan Zhang et al.

CURRENT BIOLOGY (2020)

Article Multidisciplinary Sciences

Dense and pleiotropic regulatory information in a developmental enhancer

Timothy Fuqua et al.

NATURE (2020)

Article Multidisciplinary Sciences

Deep conservation of the enhancer regulatory code in animals

Emily S. Wong et al.

SCIENCE (2020)

Review Genetics & Heredity

Mapping Regulatory Determinants in Plants

Mary Galli et al.

FRONTIERS IN GENETICS (2020)

Article Biochemical Research Methods

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Emmanuel Paradis et al.

BIOINFORMATICS (2019)

Review Plant Sciences

CRISPR/Cas Genome Editing and Precision Plant Breeding in Agriculture

Kunling Chen et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 70 (2019)

Article Biotechnology & Applied Microbiology

Development of plant regeneration and Agrobacterium tumefaciens-mediated transformation methodology for Physalis pruinosa

Kerry Swartwood et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2019)

Review Plant Sciences

Challenges of Translating Gene Regulatory Information into Agronomic Improvements

Nathan Springer et al.

TRENDS IN PLANT SCIENCE (2019)

Article Multidisciplinary Sciences

Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition

Magdalena E. Potok et al.

NATURE COMMUNICATIONS (2019)

Review Cell Biology

Evolution, Initiation, and Diversity in Early Plant Embryogenesis

Tatyana Radoeva et al.

DEVELOPMENTAL CELL (2019)

Review Multidisciplinary Sciences

Revolutions in agriculture chart a course for targeted breeding of old and new crops

Yuval Eshed et al.

SCIENCE (2019)

Article Multidisciplinary Sciences

Renewing Felsenstein's phylogenetic bootstrap in the era of big data

F. Lemoine et al.

NATURE (2018)

Article Plant Sciences

Rapid improvement of domestication traits in an orphan crop by genome editing

Zachary H. Lemmon et al.

NATURE PLANTS (2018)

Review Biology

New genes from old: asymmetric divergence of gene duplicates and the evolution of development

Peter W. H. Holland et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)

Article Biochemistry & Molecular Biology

Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing

Daniel Rodriguez-Leal et al.

Article Cell Biology

Enhancer evolution and the origins of morphological novelty

Mark Rebeiz et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2017)

Article Biochemistry & Molecular Biology

Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene

Sebastian Soyk et al.

Article Biochemical Research Methods

The detection and characterization of pleiotropy: discovery, progress, and promise

Anna L. Tyler et al.

BRIEFINGS IN BIOINFORMATICS (2016)

Article Evolutionary Biology

Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses

Robert Lanfear et al.

GENOME BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation

Zachary H. Lemmon et al.

GENOME RESEARCH (2016)

Article Biochemistry & Molecular Biology

Stem Cell Regulation by Arabidopsis WOX Genes

Alicja Dolzblasz et al.

MOLECULAR PLANT (2016)

Editorial Material Genetics & Heredity

A plethora of pleiotropy across complex traits

Peter M. Visscher et al.

NATURE GENETICS (2016)

Article Biochemistry & Molecular Biology

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Plant Sciences

Evolution of Gene Duplication in Plants

Nicholas Panchy et al.

PLANT PHYSIOLOGY (2016)

Review Plant Sciences

Lessons from Domestication: Targeting Cis-Regulatory Elements for Crop Improvement

Gwen Swinnen et al.

TRENDS IN PLANT SCIENCE (2016)

Article Biochemistry & Molecular Biology

Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1

Wakana Tanaka et al.

PLANT CELL (2015)

Review Plant Sciences

The role of WOX genes in flower development

Enrico Costanzo et al.

ANNALS OF BOTANY (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

MafFilter: a highly flexible and extensible multiple genome alignment files processor

Julien Y. Dutheil et al.

BMC GENOMICS (2014)

Article Cell Biology

The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains

Wibke Schwarzer et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)

Review Plant Sciences

Meristem maturation and inflorescence architecture - lessons from the Solanaceae

Soon Ju Park et al.

CURRENT OPINION IN PLANT BIOLOGY (2014)

Review Plant Sciences

Control of grass inflorescence form by the fine-tuning of meristem phase change

Junko Kyozuka et al.

CURRENT OPINION IN PLANT BIOLOGY (2014)

Article Plant Sciences

WUSCHEL-RELATED HOMEOBOX 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce

Tianqing Zhu et al.

JOURNAL OF EXPERIMENTAL BOTANY (2014)

Article Multidisciplinary Sciences

Origins and Evolution of WUSCHEL-Related Homeobox Protein Family in Plant Kingdom

Gaibin Lian et al.

SCIENTIFIC WORLD JOURNAL (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Review Developmental Biology

Conserved non-coding elements and cis regulation: actions speak louder than words

Andrew C. Nelson et al.

DEVELOPMENT (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biotechnology & Applied Microbiology

Evaluation of methods for modeling transcription factor sequence specificity

Matthew T. Weirauch et al.

NATURE BIOTECHNOLOGY (2013)

Review Genetics & Heredity

Evolution of crop species: genetics of domestication and diversification

Rachel S. Meyer et al.

NATURE REVIEWS GENETICS (2013)

Review Genetics & Heredity

Pleiotropy in complex traits: challenges and strategies

Nadia Solovieff et al.

NATURE REVIEWS GENETICS (2013)

Article Multidisciplinary Sciences

Evolutionarily conserved repressive activity of WOX proteins mediates leaf blade outgrowth and floral organ development in plants

Hao Lin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Genetics & Heredity

The many faces of pleiotropy

Annalise B. Paaby et al.

TRENDS IN GENETICS (2013)

Review Genetics & Heredity

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

Patricia J. Wittkopp et al.

NATURE REVIEWS GENETICS (2012)

Article Multidisciplinary Sciences

Rate of meristem maturation determines inflorescence architecture in tomato

Soon Ju Park et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

FIMO: scanning for occurrences of a given motif

Charles E. Grant et al.

BIOINFORMATICS (2011)

Review Genetics & Heredity

The pleiotropic structure of the genotype-phenotype map: the evolvability of complex organisms

Guenter P. Wagner et al.

NATURE REVIEWS GENETICS (2011)

Article Multidisciplinary Sciences

A Modular Cloning System for Standardized Assembly of Multigene Constructs

Ernst Weber et al.

PLOS ONE (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Review Developmental Biology

Twenty years on: The inner workings of the shoot apical meristem, a developmental dynamo

M. K. Barton

DEVELOPMENTAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Detection of nonneutral substitution rates on mammalian phylogenies

Katherine S. Pollard et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Genomic patterns of pleiotropy and the evolution of complexity

Zhi Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Plant Sciences

WRKY transcription factors

Paul J. Rushton et al.

TRENDS IN PLANT SCIENCE (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Plant Sciences

cis-Regulatory elements in plant cell signaling

Henry D. Priest et al.

CURRENT OPINION IN PLANT BIOLOGY (2009)

Article Developmental Biology

Flexibility of transcription factor target site position in conserved cis-regulatory modules

R. Andrew Cameron et al.

DEVELOPMENTAL BIOLOGY (2009)

Review Multidisciplinary Sciences

Deep homology and the origins of evolutionary novelty

Neil Shubin et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Evolutionary Biology

Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis

Yves Deveaux et al.

BMC EVOLUTIONARY BIOLOGY (2008)

Article Cell Biology

Role of EVERGREEN in the development of the cymose petunia inflorescence

Alexandra B. Rebocho et al.

DEVELOPMENTAL CELL (2008)

Article Biochemistry & Molecular Biology

The Making of a Compound Inflorescence in Tomato and Related Nightshades

Zachary B. Lippman et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem

I Bäurle et al.

PLANT CELL (2005)

Article Biochemistry & Molecular Biology

Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance

XL Wu et al.

CURRENT BIOLOGY (2005)

Article Biochemical Research Methods

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

A Stamatakis et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

VISTA: computational tools for comparative genomics

KA Frazer et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

Glocal alignment: finding rearrangements during alignment

Michael Brudno et al.

BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

AVID: A global alignment program

N Bray et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

R Edgar et al.

NUCLEIC ACIDS RESEARCH (2002)