Related references
Note: Only part of the references are listed.Structural Variants Create New Topological-Associated Domains and Ectopic Retinal Enhancer-Gene Contact in Dominant Retinitis Pigmentosa
Suzanne E. de Bruijn et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2020)
Functional annotation of rare structural variation in the human brain
Lide Han et al.
NATURE COMMUNICATIONS (2020)
DeepC: predicting 3D genome folding using megabase-scale transfer learning
Ron Schwessinger et al.
NATURE METHODS (2020)
Predicting 3D genome folding from DNA sequence with Akita
Geoff Fudenberg et al.
NATURE METHODS (2020)
3D genome evolution and reorganization in the Drosophila melanogaster species group
Nicole S. Torosin et al.
PLOS GENETICS (2020)
Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
William W. Greenwald et al.
NATURE COMMUNICATIONS (2019)
Joint analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes
Jingting Yu et al.
BMC GENETICS (2019)
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
Yad Ghavi-Helm et al.
NATURE GENETICS (2019)
The ENCODE Blacklist: Identification of Problematic Regions of the Genome
Haley M. Amemiya et al.
SCIENTIFIC REPORTS (2019)
Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF
Yang Yang et al.
CELL SYSTEMS (2019)
A global overview of pleiotropy and genetic architecture in complex traits
Kyoko Watanabe et al.
NATURE GENETICS (2019)
Functional disease architectures reveal unique biological role of transposable elements
Farhad Hormozdiari et al.
NATURE COMMUNICATIONS (2019)
Most chromatin interactions are not in linkage disequilibrium
Sean Whalen et al.
GENOME RESEARCH (2019)
The UCSC Genome Browser database: 2019 update
Maximilian Haeussler et al.
NUCLEIC ACIDS RESEARCH (2019)
Chromatin features constrain structural variation across evolutionary timescales
Geoff Fudenberg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Disease Heritability Enrichment of Regulatory Elements Is Concentrated in Elements with Ancient Sequence Age and Conserved Function across Species
Margaux L. A. Hujoel et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2019)
OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries
Lin An et al.
GENOME BIOLOGY (2019)
The Encyclopedia of DNA elements (ENCODE): data portal update
Carrie A. Davis et al.
NUCLEIC ACIDS RESEARCH (2018)
Quantifying the similarity of topological domains across normal and cancer human cell types
Natalie Sauerwald et al.
BIOINFORMATICS (2018)
Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits
Farhad Hormozdiari et al.
NATURE GENETICS (2018)
Structural variation in the 3D genome
Malte Spielmann et al.
NATURE REVIEWS GENETICS (2018)
Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries
Yixiao Gong et al.
NATURE COMMUNICATIONS (2018)
Evolutionary stability of topologically associating domains is associated with conserved gene regulation
Jan Krefting et al.
BMC BIOLOGY (2018)
Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk
Yakir A. Reshef et al.
NATURE GENETICS (2018)
Functional architecture of low-frequency variants highlights strength of negative selection across coding and non-coding annotations
Steven Gazal et al.
NATURE GENETICS (2018)
Organizational principles of 3D genome architecture
M. Jordan Rowley et al.
NATURE REVIEWS GENETICS (2018)
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Yanli Wang et al.
GENOME BIOLOGY (2018)
Comparison of computational methods for the identification of topologically associating domains
Marie Zufferey et al.
GENOME BIOLOGY (2018)
Genetic effects on gene expression across human tissues
Francois Aguet et al.
NATURE (2017)
Linkage disequilibrium-dependent architecture of human complex traits shows action of negative selection
Steven Gazal et al.
NATURE GENETICS (2017)
A critical assessment of topologically associating domain prediction tools
Rola Dali et al.
NUCLEIC ACIDS RESEARCH (2017)
Multiscale 3D Genome Rewiring during Mouse Neural Development
Boyan Bonev et al.
CELL (2017)
Insulator dysfunction and oncogene activation in IDH mutant gliomas
William A. Flavahan et al.
NATURE (2016)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Chromatin Domains: The Unit of Chromosome Organization
Jesse R. Dixon et al.
MOLECULAR CELL (2016)
Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses
Aysu Okbay et al.
NATURE GENETICS (2016)
Genome-wide analysis identifies 12 loci influencing human reproductive behavior
Nicola Barban et al.
NATURE GENETICS (2016)
Regulation of disease-associated gene expression in the 3D genome
Peter Hugo Lodewijk Krijger et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)
Activation of proto-oncogenes by disruption of chromosome neighborhoods
Denes Hnisz et al.
SCIENCE (2016)
A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
Anthony D. Schmitt et al.
CELL REPORTS (2016)
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
Dario G. Lupianez et al.
CELL (2015)
Structural and functional diversity of Topologically Associating Domains
Job Dekker et al.
FEBS LETTERS (2015)
The Hitchhiker's guide to Hi-C analysis: Practical guidelines
Bryan R. Lajoie et al.
METHODS (2015)
Chromatin architecture reorganization during stem cell differentiation
Jesse R. Dixon et al.
NATURE (2015)
Integrative analysis of haplotype-resolved epigenomes across human tissues
Danny Leung et al.
NATURE (2015)
A global reference for human genetic variation
David M. Altshuler et al.
NATURE (2015)
Partitioning heritability by functional annotation using genome-wide association summary statistics
Hilary K. Finucane et al.
NATURE GENETICS (2015)
LD Score regression distinguishes confounding from polygenicity in genome-wide association studies
Brendan K. Bulik-Sullivan et al.
NATURE GENETICS (2015)
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
Matteo Vietri Rudan et al.
CELL REPORTS (2015)
UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age
Cathie Sudlow et al.
PLOS MEDICINE (2015)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
Stefan Groeschel et al.
CELL (2014)
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
Francois Le Dily et al.
GENES & DEVELOPMENT (2014)
A genome-wide association study of anorexia nervosa
V. Boraska et al.
MOLECULAR PSYCHIATRY (2014)
Genetics of rheumatoid arthritis contributes to biology and drug discovery
Yukinori Okada et al.
NATURE (2014)
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
Paul A. Northcott et al.
NATURE (2014)
Biological insights from 108 schizophrenia-associated genetic loci
Stephan Ripke et al.
NATURE (2014)
Higher-order chromatin domains link eQTLs with the expression of far-away genes
Geet Duggal et al.
NUCLEIC ACIDS RESEARCH (2014)
Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture
Job Dekker
EPIGENETICS & CHROMATIN (2014)
Beyond GWASs: Illuminating the Dark Road from Association to Function
Stacey L. Edwards et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis
Jordan W. Smoller et al.
LANCET (2013)
Functional implications of genome topology
Giacomo Cavalli et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Human housekeeping genes, revisited
Eli Eisenberg et al.
TRENDS IN GENETICS (2013)
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
Tom Sexton et al.
CELL (2012)
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
Luke Jostins et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
Ryan K. Dale et al.
BIOINFORMATICS (2011)
High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
Geoff Fudenberg et al.
NATURE BIOTECHNOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Integrating common and rare genetic variation in diverse human populations
David M. Altshuler et al.
NATURE (2010)
Biological, clinical and population relevance of 95 loci for blood lipids
Tanya M. Teslovich et al.
NATURE (2010)
Higher-order Genome Organization in Human Disease
Tom Misteli
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)
Disease-specific gene repositioning in breast cancer
Karen J. Meaburn et al.
JOURNAL OF CELL BIOLOGY (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel et al.
GENOME RESEARCH (2005)
The UCSC Table Browser data retrieval tool
D Karolchik et al.
NUCLEIC ACIDS RESEARCH (2004)
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
T Cremer et al.
NATURE REVIEWS GENETICS (2001)