4.7 Article

Indexing Highly Repetitive String Collections, Part II: Compressed Indexes

Related references

Note: Only part of the references are listed.
Article Computer Science, Hardware & Architecture

Grammar-compressed indexes with logarithmic search time

Francisco Claude et al.

Summary: The text introduces a new grammar-compressed index method that efficiently finds occurrences of patterns in a text, and demonstrates its practicality in real-world applications.

JOURNAL OF COMPUTER AND SYSTEM SCIENCES (2021)

Article Mathematics, Applied

Dynamic index and LZ factorization in compressed space

Takaaki Nishimoto et al.

DISCRETE APPLIED MATHEMATICS (2020)

Article Computer Science, Theory & Methods

Refining the r-index

Hideo Bannai et al.

THEORETICAL COMPUTER SCIENCE (2020)

Article Computer Science, Theory & Methods

Parallel computation of the Burrows Wheeler Transform in compact space

Jose Fuentes-Sepulveda et al.

THEORETICAL COMPUTER SCIENCE (2020)

Article Computer Science, Hardware & Architecture

Fully Functional Suffix Trees and Optimal Text Searching in BWT-Runs Bounded Space

Travis Gagie et al.

JOURNAL OF THE ACM (2020)

Article Computer Science, Software Engineering

Lempel-Ziv-Like Parsing in Small Space

Dmitry Kosolobov et al.

ALGORITHMICA (2020)

Article Biochemical Research Methods

Efficient Construction of a Complete Index for Pan-Genomics Read Alignment

Alan Kuhnle et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2020)

Article Computer Science, Theory & Methods

Universal compressed text indexing

Gonzalo Navarro et al.

THEORETICAL COMPUTER SCIENCE (2019)

Article Biochemical Research Methods

Prefix-free parsing for building big BWTs

Christina Boucher et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2019)

Article Computer Science, Theory & Methods

Time-space trade-offs for Lempel-Ziv compressed indexing

Philip Bille et al.

THEORETICAL COMPUTER SCIENCE (2018)

Article Computer Science, Software Engineering

Lempel-Ziv Factorization Powered by Space Efficient Suffix Trees

Johannes Fischer et al.

ALGORITHMICA (2018)

Article Mathematics, Applied

A faster implementation of online RLBWT and its application to LZ77 parsing

Tatsuya Ohno et al.

JOURNAL OF DISCRETE ALGORITHMS (2018)

Article Computer Science, Software Engineering

LZ77 Computation Based on the Run-Length Encoded BWT

Alberto Policriti et al.

ALGORITHMICA (2018)

Article Computer Science, Theory & Methods

TIME-OPTIMAL TOP-k DOCUMENT RETRIEVAL

Gonzalo Navarro et al.

SIAM JOURNAL ON COMPUTING (2017)

Article Computer Science, Information Systems

Universal indexes for highly repetitive document collections

Francisco Claude et al.

INFORMATION SYSTEMS (2016)

Article Computer Science, Theory & Methods

A really simple approximation of smallest grammar

Artur Jez

THEORETICAL COMPUTER SCIENCE (2016)

Proceedings Paper Computer Science, Theory & Methods

Burrows-Wheeler transform for terabases

Jouni Siren

2016 DATA COMPRESSION CONFERENCE (DCC) (2016)

Article Computer Science, Theory & Methods

Approximation of grammar-based compression via recompression

Artur Jez

THEORETICAL COMPUTER SCIENCE (2015)

Review Biotechnology & Applied Microbiology

Searching and indexing genomic databases via kernelization

Travis Gagie et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2015)

Article Mathematics, Applied

Time-space trade-offs for longest common extensions

Philip Bille et al.

JOURNAL OF DISCRETE ALGORITHMS (2014)

Article Computer Science, Theory & Methods

On compressing and indexing repetitive sequences

Sebastian Kreft et al.

THEORETICAL COMPUTER SCIENCE (2013)

Article Mathematics, Applied

ESP-index: A compressed index based on edit-sensitive parsing

Shirou Maruyama et al.

JOURNAL OF DISCRETE ALGORITHMS (2013)

Article Computer Science, Software Engineering

Lightweight Data Indexing and Compression in External Memory

Paolo Ferragina et al.

ALGORITHMICA (2012)

Article Computer Science, Artificial Intelligence

An Online Algorithm for Lightweight Grammar-Based Compression

Shirou Maruyama et al.

ALGORITHMS (2012)

Article Computer Science, Theory & Methods

SPACE-EFFICIENT PREPROCESSING SCHEMES FOR RANGE MINIMUM QUERIES ON STATIC ARRAYS

Johannes Fischer et al.

SIAM JOURNAL ON COMPUTING (2011)

Article Computer Science, Theory & Methods

A quick tour on suffix arrays and compressed suffix arrays

Roberto Grossi

THEORETICAL COMPUTER SCIENCE (2011)

Article Computer Science, Artificial Intelligence

Effective content-based video retrieval using pattern-indexing and matching techniques

Ja-Hwung Su et al.

EXPERT SYSTEMS WITH APPLICATIONS (2010)

Article Biochemical Research Methods

Storage and Retrieval of Highly Repetitive Sequence Collections

Veli Makinen et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2010)

Article Computer Science, Information Systems

Mining Query Logs: Turning Search Usage Data into Knowledge

F. Silvestri

Foundations and Trends in Information Retrieval (2010)

Article Computer Science, Artificial Intelligence

Sourcerer: mining and searching internet-scale software repositories

Erik Linstead et al.

DATA MINING AND KNOWLEDGE DISCOVERY (2009)

Article Computer Science, Theory & Methods

BREAKING A TIME-AND-SPACE BARRIER IN CONSTRUCTING FULL-TEXT INDICES

Wing-Kai Hon et al.

SIAM JOURNAL ON COMPUTING (2009)

Article Mathematics, Applied

Lempel-Ziv Factorization Using Less Time & Space

Gang Chen et al.

MATHEMATICS IN COMPUTER SCIENCE (2008)

Article Computer Science, Theory & Methods

Fast BWT in small space by blockwise suffix sorting

Juha Karkkainen

THEORETICAL COMPUTER SCIENCE (2007)

Article Computer Science, Software Engineering

A space and time efficient algorithm for constructing compressed suffix arrays

Wing-Kai Hon et al.

ALGORITHMICA (2007)

Article Computer Science, Hardware & Architecture

Linear work suffix array construction

Juha Karkkainen et al.

JOURNAL OF THE ACM (2006)

Article Computer Science, Hardware & Architecture

Indexing compressed text

P Ferragina et al.

JOURNAL OF THE ACM (2005)

Article Mathematics, Applied

A fully linear-time approximation algorithm for grammar-based compression

Hiroshi Sakamoto

JOURNAL OF DISCRETE ALGORITHMS (2005)

Article Mathematics, Applied

Space efficient linear time construction of suffix arrays

Pang Ko et al.

JOURNAL OF DISCRETE ALGORITHMS (2005)

Article Mathematics, Applied

Constructing suffix arrays in linear time

Dong Kyue Kim et al.

JOURNAL OF DISCRETE ALGORITHMS (2005)

Article Engineering, Electrical & Electronic

Off-line dictionary-based compression

NJ Larsson et al.

PROCEEDINGS OF THE IEEE (2000)

Article Computer Science, Hardware & Architecture

On the sorting-complexity of suffix tree construction

M Farach-Colton et al.

JOURNAL OF THE ACM (2000)