Related references
Note: Only part of the references are listed.Development and Validation of a MicroRNA Panel to Differentiate Between Patients with Rheumatoid Arthritis or Systemic Lupus Erythematosus and Controls
Michelle J. Ormseth et al.
JOURNAL OF RHEUMATOLOGY (2020)
IsomiRs and tRNA-derived fragments are associated with metastasis and patient survival in uveal melanoma
Eric Londin et al.
PIGMENT CELL & MELANOMA RESEARCH (2020)
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API
Thomas Desvignes et al.
BIOINFORMATICS (2020)
Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq data
Xiangfu Zhong et al.
BIOINFORMATICS (2020)
MicroRNA-411 and Its 5′-IsomiR Have Distinct Targets and Functions and Are Differentially Regulated in the Vasculature under Ischemia
Reginald V. C. T. van der Kwast et al.
MOLECULAR THERAPY (2020)
Predicting the presence of breast cancer using circulating small RNAs, including those in the extracellular vesicles
Yumiko Koi et al.
CANCER SCIENCE (2020)
Circulating microRNA/isomiRs as novel biomarkers of esophageal squamous cell carcinoma
Yuta Ibuki et al.
PLOS ONE (2020)
Expression profiling of microRNAs and isomiRs in conventional central chondrosarcoma
Antonina Parafioriti et al.
CELL DEATH DISCOVERY (2020)
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
Hirosha Geekiyanage et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Tumor classification and biomarker discovery based on the 5'isomiR expression level
Shengqin Wang et al.
BMC CANCER (2019)
OPTIMIR, a novel algorithm for integrating available genome-wide genotype data into miRNA sequence alignment analysis
Florian Thibord et al.
RNA (2019)
CBS-miRSeq: A comprehensive tool for accurate and extensive analyses of microRNA-sequencing data
Rupesh K. Kesharwani et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2019)
Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis
Brian Reichholf et al.
MOLECULAR CELL (2019)
QuagmiR: a cloud-based application for isomiR big data analytics
Xavier Bofill-De Ros et al.
BIOINFORMATICS (2019)
miRBase: from microRNA sequences to function
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2019)
Robust profiling of microRNAs and isomiRs in human plasma exosomes across 46 individuals
Tommy A. Karlsen et al.
SCIENTIFIC REPORTS (2019)
miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish
Thomas Desvignes et al.
SCIENTIFIC REPORTS (2019)
A Comprehensive Approach to Sequence-oriented IsomiR annotation (CASMIR): demonstration with IsomiR profiling in colorectal neoplasia
Chung Wah Wu et al.
BMC GENOMICS (2018)
Cancer Diagnosis Through IsomiR Expression with Machine Learning Method
Zhijun Liao et al.
CURRENT BIOINFORMATICS (2018)
Higher variety and quantity of microRNA-139-5p isoforms confer suppressive role in hepatocellular carcinoma
Hengli Ni et al.
JOURNAL OF CELLULAR BIOCHEMISTRY (2018)
miRDis: a Web tool for endogenous and exogenous microRNA discovery based on deep-sequencing data analysis
Hanyuan Zhang et al.
BRIEFINGS IN BIOINFORMATICS (2018)
Characterizing isomiR variants within the microRNA-34/449 family
Olivier Mercey et al.
FEBS LETTERS (2017)
Genome-wide Mapping of DROSHA Cleavage Sites on Primary MicroRNAs and Noncanonical Substrates
Baekgyu Kim et al.
MOLECULAR CELL (2017)
Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs
Tobias Fehlmann et al.
NUCLEIC ACIDS RESEARCH (2017)
sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline
Xiaogang Wu et al.
NUCLEIC ACIDS RESEARCH (2017)
Differential hepatitis C virus RNA target site selection and host factor activities of naturally occurring miR-122 3′ variants
Daisuke Yamane et al.
NUCLEIC ACIDS RESEARCH (2017)
Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types
Aristeidis G. Telonis et al.
NUCLEIC ACIDS RESEARCH (2017)
Deep sequencing and analyses of miRNAs, isomiRs and miRNA induced silencing complex (miRISC)-associated miRNome in primary human chondrocytes
Abdul Haseeb et al.
SCIENTIFIC REPORTS (2017)
QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing
Shanrong Zhao et al.
BMC BIOINFORMATICS (2017)
isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation
Gianvito Urgese et al.
BMC BIOINFORMATICS (2016)
The highly expressed 5′isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration
Omar Salem et al.
BMC GENOMICS (2016)
Dysregulation of miRNA isoform level at 5′ end in Alzheimer's disease
Shengqin Wang et al.
GENE (2016)
A Specialized Mechanism of Translation Mediated by FXR1a-Associated MicroRNP in Cellular Quiescence
Syed I. A. Bukhari et al.
MOLECULAR CELL (2016)
DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data
Yuanwei Zhang et al.
NUCLEIC ACIDS RESEARCH (2016)
Evaluation of microRNA alignment techniques
Mark Ziemann et al.
RNA (2016)
Non-invasive prostate cancer detection by measuring miRNA variants (isomiRs) in urine extracellular vesicles
Danijela Koppers-Lalic et al.
ONCOTARGET (2016)
miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels
Li Guo et al.
SCIENTIFIC REPORTS (2016)
Chimira: analysis of small RNA sequencing data and microRNA modifications
Dimitrios M. Vitsios et al.
BIOINFORMATICS (2015)
Small-RNA asymmetry is directly driven by mammalian Argonautes
Hiroshi I. Suzuki et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Destabilization of microRNAs in human cells by 3′ deadenylation mediated by PARN and CUGBP1
Takayuki Katoh et al.
NUCLEIC ACIDS RESEARCH (2015)
Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity
Aristeidis G. Telonis et al.
NUCLEIC ACIDS RESEARCH (2015)
sRNAtoolbox: an integrated collection of small RNA research tools
Antonio Rueda et al.
NUCLEIC ACIDS RESEARCH (2015)
Small RNA deep sequencing discriminates subsets of extracellular vesicles released by melanoma cells - Evidence of unique microRNA cargos
Taral R. Lunavat et al.
RNA BIOLOGY (2015)
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants
T. Desvignes et al.
TRENDS IN GENETICS (2015)
Small-RNA asymmetry is directly driven by mammalian Argonautes
Hiroshi I. Suzuki et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs
Jieming Shi et al.
SCIENTIFIC REPORTS (2015)
Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs
Katherine J. Siddle et al.
PLOS GENETICS (2015)
miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data
Abhinav Kaushik et al.
PEERJ (2015)
miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy
Alexander S. Baras et al.
PLOS ONE (2015)
MIRPIPE: quantification of microRNAs in niche model organisms
Carsten Kuenne et al.
BIOINFORMATICS (2014)
miRBase: annotating high confidence microRNAs using deep sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2014)
5 ' isomiR variation is of functional and evolutionary importance
Geok Chin Tan et al.
NUCLEIC ACIDS RESEARCH (2014)
Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4)
James E. Thornton et al.
NUCLEIC ACIDS RESEARCH (2014)
A Novel miR-451a isomiR, Associated with Amelanotypic Phenotype, Acts as a Tumor Suppressor in Melanoma by Retarding Cell Migration and Invasion
Sankhiros Babapoor et al.
PLOS ONE (2014)
PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease
Joost Boele et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies
Phillipe Loher et al.
ONCOTARGET (2014)
Nontemplated Nucleotide Additions Distinguish the Small RNA Composition in Cells from Exosomes
Danijela Koppers-Lalic et al.
CELL REPORTS (2014)
isomiRID: a framework to identify microRNA isoforms
Luiz Felipe Valter de Oliveira et al.
BIOINFORMATICS (2013)
iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
Giorgio Giurato et al.
BMC BIOINFORMATICS (2013)
Differential roles of human Dicer-binding proteins TRBP and PACT in small RNA processing
Ho Young Lee et al.
NUCLEIC ACIDS RESEARCH (2013)
mirTools 2.0 for non-coding RNA discovery, profiling and functional annotation based on high-throughput sequencing
Jinyu Wu et al.
RNA BIOLOGY (2013)
A comprehensive characterization of the nuclear microRNA repertoire of post-mitotic neurons
Sharof A. Khudayberdiev et al.
FRONTIERS IN MOLECULAR NEUROSCIENCE (2013)
miRNA arm selection and isomiR distribution in gastric cancer
Sung-Chou Li et al.
BMC GENOMICS (2012)
Mono-Uridylation of Pre-MicroRNA as a Key Step in the Biogenesis of Group II let-7 MicroRNAs
Inha Heo et al.
CELL (2012)
MicroRNA Factory: RISC Assembly from Precursor MicroRNAs
Yoosik Kim et al.
MOLECULAR CELL (2012)
Complexity of Murine Cardiomyocyte miRNA Biogenesis, Sequence Variant Expression and Function
David T. Humphreys et al.
PLOS ONE (2012)
The Repertoire and Features of Human Platelet microRNAs
Helene Ple et al.
PLOS ONE (2012)
Functional parameters of Dicer-independent microRNA biogenesis
Jr-Shiuan Yang et al.
RNA (2012)
IsomiRs - the overlooked repertoire in the dynamic microRNAome
Corine T. Neilsen et al.
TRENDS IN GENETICS (2012)
MicroRNA-mediated mRNA Translation Activation in Quiescent Cells and Oocytes Involves Recruitment of a Nuclear microRNP
S. S. Truesdell et al.
SCIENTIFIC REPORTS (2012)
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
Stacia K. Wyman et al.
GENOME RESEARCH (2011)
CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation
David M. Burns et al.
NATURE (2011)
Dicer recognizes the 5′ end of RNA for efficient and accurate processing
Jong-Eun Park et al.
NATURE (2011)
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
Eric Huntzinger et al.
NATURE REVIEWS GENETICS (2011)
miRBase: integrating microRNA annotation and deep-sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2011)
Deep-sequencing of human argonaute-associated small RNAs provides insight into miRNA sorting and reveals argonaute association with RNA fragments of diverse origin
Alexander Maxwell Burroughs et al.
RNA BIOLOGY (2011)
MicroRNAs and their isomiRs function cooperatively to target common biological pathways
Nicole Cloonan et al.
GENOME BIOLOGY (2011)
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
A. Maxwell Burroughs et al.
GENOME RESEARCH (2010)
Structural basis for 5′-nucleotide base-specific recognition of guide RNA by human AGO2
Filipp Frank et al.
NATURE (2010)
A Dicer-independent miRNA biogenesis pathway that requires Ago catalysis
Sihem Cheloufi et al.
NATURE (2010)
Mammalian microRNAs predominantly act to decrease target mRNA levels
Huili Guo et al.
NATURE (2010)
SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells
Lorena Pantano et al.
NUCLEIC ACIDS RESEARCH (2010)
A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing
Eulalia Marti et al.
NUCLEIC ACIDS RESEARCH (2010)
Dynamic isomiR regulation in Drosophila development
Selene L. Fernandez-Valverde et al.
RNA (2010)
Complexity of the microRNA repertoire revealed by next-generation sequencing
Lik Wee Lee et al.
RNA (2010)
A Novel miRNA Processing Pathway Independent of Dicer Requires Argonaute2 Catalytic Activity
Daniel Cifuentes et al.
SCIENCE (2010)
MicroRNAs in Cancer
Yong Sun Lee et al.
ANNUAL REVIEW OF PATHOLOGY-MECHANISMS OF DISEASE (2009)
Identification and characterization of new miRNAs cloned from normal mouse mammary gland
Nezha Sdassi et al.
BMC GENOMICS (2009)
TUT4 in Concert with Lin28 Suppresses MicroRNA Biogenesis through Pre-MicroRNA Uridylation
Inha Heo et al.
CELL (2009)
Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
Takayuki Katoh et al.
GENES & DEVELOPMENT (2009)
Most mammalian mRNAs are conserved targets of microRNAs
Robin C. Friedman et al.
GENOME RESEARCH (2009)
Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells
John P. Hagan et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Alternative Processing of Primary microRNA Transcripts by Drosha Generates 5′ End Variation of Mature microRNA
Haoquan Wu et al.
PLOS ONE (2009)
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
Ryan D. Morin et al.
GENOME RESEARCH (2008)
MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation
Ulf Andersson Orom et al.
MOLECULAR CELL (2008)
Switching from repression to activation: MicroRNAs can up-regulate translation
Shobha Vasudevan et al.
SCIENCE (2007)
Mammalian mirtron genes
Eugene Berezikov et al.
MOLECULAR CELL (2007)
The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
Katsutomo Okamura et al.
CELL (2007)
Intronic microRNA precursors that bypass Drosha processing
J. Graham Ruby et al.
NATURE (2007)
A mammalian microRNA expression atlas based on small RNA library sequencing
Pablo Landgraf et al.
CELL (2007)
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
Yukio Kawahara et al.
SCIENCE (2007)
P bodies: at the crossroads of post-transcriptional pathways
Ana Eulalio et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
The role of PACT in the RNA silencing pathway
Y Lee et al.
EMBO JOURNAL (2006)
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
WD Yang et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)
microPrimer: The biogenesis and function of microRNA
TT Du et al.
DEVELOPMENT (2005)
Recognition and cleavage of primary microRNA precursors by the nuclear processing enzyme Drosha
Y Zeng et al.
EMBO JOURNAL (2005)
Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs
MT Bohnsack et al.
RNA (2004)
Nuclear export of microRNA precursors
E Lund et al.
SCIENCE (2004)
Argonaute2 is the catalytic engine of mammalian RNAi
JD Liu et al.
SCIENCE (2004)
Single processing center models for human dicer and bacterial RNase III
HD Zhang et al.
CELL (2004)
The Microprocessor complex mediates the genesis of microRNAs
RI Gregory et al.
NATURE (2004)
MicroRNA genes are transcribed by RNA polymerase II
Y Lee et al.
EMBO JOURNAL (2004)
Identification of mammalian microRNA host genes and transcription units
A Rodriguez et al.
GENOME RESEARCH (2004)
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
R Yi et al.
GENES & DEVELOPMENT (2003)
Functional siRNAs and miRNAs exhibit strand bias (vol 115, pg 209, 2003)
A Khvorova et al.
CELL (2003)
Asymmetry in the assembly of the RNAi enzyme complex
DS Schwarz et al.
CELL (2003)
The nuclear RNase III Drosha initiates microRNA processing
Y Lee et al.
NATURE (2003)
MicroRNA maturation: stepwise processing and subcellular localization
Y Lee et al.
EMBO JOURNAL (2002)
Identification of novel genes coding for small expressed RNAs
M Lagos-Quintana et al.
SCIENCE (2001)
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
G Hutvágner et al.
SCIENCE (2001)
Role for a bidentate ribonuclease in the initiation step of RNA interference
E Bernstein et al.
NATURE (2001)