4.7 Article

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Journal

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
Volume 19, Issue -, Pages 1127-1144

Publisher

ELSEVIER
DOI: 10.1016/j.csbj.2021.01.004

Keywords

Mass spectrometry; Specialized metabolism; Spectral metadata analysis; Zea mays

Funding

  1. Vlaams Instituut voor Biotechnologie (VIB)
  2. Ghent University
  3. SBO project ARBOREF [140894]
  4. SBO project BIOLEUM [130039]
  5. Fonds voor Wetenschappelijk Onderzoek Vlaanderen (FWO) [151562]
  6. ERC-Advanced-Grant POPMET
  7. ERA-CAPS (BENZEX)
  8. Database Integration Coordination Program by the National Bioscience Database Center (Japan)
  9. Cabinet Office, Government of Japan, Cross-ministerial Strategic Innovation Promotion Program (SIP), Technologies for Smart Bio-industry and Agriculture(Bio-oriented Technology Research Advancement Institution, NARO)
  10. DOE Great Lakes Bioenergy Research Center (DOE Office of Science) [BER DE-SC0018409]
  11. Hercules program of Ghent University [AUGE/014]
  12. Bijzonder Onderzoeksfonds-Zware Apparatuur of Ghent University [174PZA05]

Ask authors/readers for more resources

This study profiled five maize organs using different liquid chromatography-mass spectrometry methods and identified 427 compounds, including phenylpropanoids, flavonoids, benzoxazinoids, and auxin-related compounds. The analysis of candidate substrate-product pair networks revealed that phenylpropanoids are present in all organs, while other metabolic classes are organ-enriched. The findings provide important insights into the metabolic pathways and systems biology of maize.
Despite the scientific and economic importance of maize, little is known about its specialized metabolism. Here, five maize organs were profiled using different reversed-phase liquid chromatography-mass spectrometry methods. The resulting spectral metadata, combined with candidate substrate-product pair (CSPP) networks, allowed the structural characterization of 427 of the 5,420 profiled compounds, including phenylpropanoids, flavonoids, benzoxazinoids, and auxin-related compounds, among others. Only 75 of the 427 compounds were already described in maize. Analysis of the CSPP networks showed that phenylpropanoids are present in all organs, whereas other metabolic classes are rather organ-enriched. Frequently occurring CSPP mass differences often corresponded with glycosyl- and acyltransferase reactions. The interplay of glycosylations and acylations yields a wide variety of mixed glycosides, bearing substructures corresponding to the different biochemical classes. For example, in the tassel, many phenylpropanoid and flavonoid-bearing glycosides also contain auxin-derived moieties. The characterized compounds and mass differences are an important step forward in metabolic pathway discovery and systems biology research. (C) 2021 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.

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