Journal
NATURE MICROBIOLOGY
Volume 6, Issue 2, Pages 151-+Publisher
NATURE PORTFOLIO
DOI: 10.1038/s41564-020-00817-4
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Funding
- Studienstiftung des Deutschen Volkes
- Max Planck Society
- European Research Council [StG-716734]
- Human Frontier Science Program [CDA00084/2015-C]
- Deutsche Forschungsgemeinschaft [SFB 987]
- Bundesministerium fur Bildung und Forschung (TARGET-Biofilms)
- Behrens-Weise-Stiftung
- Minna James Heineman Foundation
- Joachim Herz Stiftung
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Biofilms are a common form of microbial life on Earth, with phenotypic and genotypic variations occurring in three-dimensional space and time, requiring microscopy and quantitative image analysis for elucidation. BiofilmQ is a comprehensive image cytometry software tool that enables visualization, quantification, and analysis of biofilm properties, providing insights into their structure and function.
Biofilms are microbial communities that represent a highly abundant form of microbial life on Earth. Inside biofilms, phenotypic and genotypic variations occur in three-dimensional space and time; microscopy and quantitative image analysis are therefore crucial for elucidating their functions. Here, we present BiofilmQ-a comprehensive image cytometry software tool for the automated and high-throughput quantification, analysis and visualization of numerous biofilm-internal and whole-biofilm properties in three-dimensional space and time. BiofilmQ is an image cytometry software tool that enables the visualization, quantification and analysis of biofilm properties, providing insights into their structure and function.
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