Comparative Transcriptome Profiling of Ovary Tissue between Black Muscovy Duck and White Muscovy Duck with High- and Low-Egg Production

The egg-laying rate is an important indicator for evaluating fertility of poultry. In order to better understand the laying mechanism of Muscovy ducks, gene expression profiles and pathways of ovarian tissues in high- and low-laying black (BH and BL) and white Muscovy ducks (WH and WL) during the peak production period were performed by using RNA-seq. The total number of reads produced for each ovarian sample ranged from 44,344,070 to 47,963,328. A total of 113, 619 and 87 differentially expressed genes (DEGs) were identified in BH-vs-WH, BL-vs-BH and BL-vs-WL, respectively. Among them, 54, 356 and 49 genes were up regulated and 59, 263 and 38 genes were down regulated. In addition, there were only 10 up-regulated genes in WL-vs-WH. In the comparison of DEGs in black and white Muscovy ducks, two co-expressed DEG genes were detected between BH-vs-WH and BL-vs-WL and seven DEGs were co-expressed between BL-vs-BH and WL-vs-WH. The RNA-Seq data were confirmed to be reliable by qPCR. Numerous DEGs known to be involved in ovarian development were identified, including TGF beta 2, NGFR, CEBPD, CPEB2, POSTN, SMOC1, FGF18, EFNA5 and SDC4. Gene Ontology (GO) annotations indicated that DEGs related to ovarian development were mainly enriched in biological processes of circadian sleep/wake cycle process, negative regulation of transforming growth factor-beta secretion, positive regulation of calcium ion transport in BH-vs-WH and cell surface receptor signaling pathway, Notch signaling pathway and calcium ion transport in BL-vs-BH. Besides, steroid biosynthetic process, granulosa cell development and egg coat formation were mainly enriched in BL-vs-WL and reproduction, MAPK cascade and mitotic cell cycle were mainly enriched in WL-vs-WH. KEGG pathway analysis showed that the PI3K-Akt signaling pathway and ovarian steroidogenesis were the most enriched in Muscovy duck ovary transcriptome data. This work highlights potential genes and pathways that may affect ovarian development in Muscovy duck.

Automated summary

This study investigated the gene expression profiles and pathways of ovarian tissues in black and white Muscovy ducks during peak egg production using RNA-seq. Numerous differentially expressed genes (DEGs) involved in ovarian development were identified, with GO annotations and KEGG pathway analysis highlighting the functional roles and enriched pathways of these DEGs.