4.6 Article

Phytophthora Root Rot Modifies the Composition of the Avocado Rhizosphere Microbiome and Increases the Abundance of Opportunistic Fungal Pathogens

Related references

Note: Only part of the references are listed.
Review Agriculture, Multidisciplinary

The role of organic amendments to soil for crop protection: Induction of suppression of soilborne pathogens

Carmen Vida et al.

ANNALS OF APPLIED BIOLOGY (2020)

Article Plant Sciences

The Bacterial Microbiome of Meloidogyne-Based Disease Complex in Coffee and Tomato

Araceli Lamelas et al.

FRONTIERS IN PLANT SCIENCE (2020)

Article Mycology

Venturiales

M. Shen et al.

STUDIES IN MYCOLOGY (2020)

Review Microbiology

Plant-microbiome interactions: from community assembly to plant health

Pankaj Trivedi et al.

NATURE REVIEWS MICROBIOLOGY (2020)

Review Multidisciplinary Sciences

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

Stephane Compant et al.

JOURNAL OF ADVANCED RESEARCH (2019)

Article Biochemistry & Molecular Biology

Rewiring bacterial two-component systems by modular DNA-binding domain swapping

Sebastian R. Schmidl et al.

NATURE CHEMICAL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

Rolf Henrik Nilsson et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Agriculture, Multidisciplinary

Identification, pathogenicity and distribution of the causal agents of dieback in avocado orchards in Spain

Isabel Arjona-Girona et al.

SPANISH JOURNAL OF AGRICULTURAL RESEARCH (2019)

Article Multidisciplinary Sciences

Assembly and ecological function of the root microbiome across angiosperm plant species

Connor R. Fitzpatrick et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Soil Science

Ralstonia solanacearum pathogen disrupts bacterial rhizosphere microbiome during an invasion

Zhong Wei et al.

SOIL BIOLOGY & BIOCHEMISTRY (2018)

Article Biotechnology & Applied Microbiology

Rhizoshere microbiome structure alters to enable wilt resistance in tomato

Min-Jung Kwak et al.

NATURE BIOTECHNOLOGY (2018)

Article Biology

Impact of Rearing Conditions on the Ambrosia Beetle's Microbiome

Luis Arturo Ibarra-Juarez et al.

LIFE-BASEL (2018)

Article Microbiology

Antifungal activity of avocado rhizobacteria against Fusarium euwallaceae and Graphium spp., associated with Euwallacea spp. nr. fornicatus, and Phytophthora cinnamomi

Edgar Guevara-Avendano et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2018)

Article Agriculture, Multidisciplinary

First report of avocado tree wilt by Pythium sp. amazonianum in Mexico

Yisa M. Ochoa Fuentes et al.

CIENCIA E INVESTIGACION AGRARIA (2018)

Article Multidisciplinary Sciences

Root-associated fungal microbiota of nonmycorrhizal &ITArabis&IT &ITalpina &ITand its contribution to plant phosphorus nutrition

Juliana Almario et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Plant root-microbe communication in shaping root microbiomes

Andrew Lareen et al.

PLANT MOLECULAR BIOLOGY (2016)

Review Plant Sciences

Signaling in the Rhizosphere

Vittorio Venturi et al.

TRENDS IN PLANT SCIENCE (2016)

Article Plant Sciences

Rhizospheric fungi of Panax notoginseng: diversity and antagonism to host phytopathogens

Cui-Ping Miao et al.

JOURNAL OF GINSENG RESEARCH (2016)

Article Microbiology

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics

Juan Jovel et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Microbiology

Aboveground Whitefly Infestation-Mediated Reshaping of the Root Microbiota

Hyun G. Kong et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

PEERJ (2016)

Article Biochemical Research Methods

Error filtering, pair assembly and error correction for next-generation sequencing reads

Robert C. Edgar et al.

BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

Biological control in the microbiome era: Challenges and opportunities

Massart Sebastien et al.

BIOLOGICAL CONTROL (2015)

Article Biotechnology & Applied Microbiology

Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids

Enrique Ibarra-Laclette et al.

BMC GENOMICS (2015)

Article Biotechnology & Applied Microbiology

Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans

Lukas Hunziker et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Review Plant Sciences

Structure and Functions of the Bacterial Microbiota of Plants

Davide Bulgarelli et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)

Article Biotechnology & Applied Microbiology

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Review Microbiology

Going back to the roots: the microbial ecology of the rhizosphere

Laurent Philippot et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Biochemical Research Methods

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

Jianxing Feng et al.

BIOINFORMATICS (2012)

Article Mycology

Pleosporales

Ying Zhang et al.

FUNGAL DIVERSITY (2012)

Review Plant Sciences

The rhizosphere microbiome and plant health

Roeland L. Berendsen et al.

TRENDS IN PLANT SCIENCE (2012)

Article Biochemical Research Methods

Quality control and preprocessing of metagenomic datasets

Robert Schmieder et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Brian J. Haas et al.

GENOME RESEARCH (2011)

Article Multidisciplinary Sciences

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

Rodrigo Mendes et al.

SCIENCE (2011)

Article Biochemical Research Methods

PyNAST: a flexible tool for aligning sequences to a template alignment

J. Gregory Caporaso et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Identifying biologically relevant differences between metagenomic communities

Donovan H. Parks et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Article Biochemical Research Methods

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

James Robert White et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

IT Paulsen et al.

NATURE BIOTECHNOLOGY (2005)

Article Biotechnology & Applied Microbiology

Assessment of genotypic diversity of antibiotic-producing Pseudomonas species in the rhizosphere by denaturing gradient gel electrophoresis

M Bergsma-Vlami et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)