Related references
Note: Only part of the references are listed.An outbreak of ST307 extended-spectrum beta-lactamase (ESBL)-producing Klebsiella pneumoniae in a rehabilitation center: An unusual source and route of transmission
Marrit B. Boonstra et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2020)
Successful control of an extended-spectrum beta-lactamase-producing Klebsiella pneumoniae ST307 outbreak in a neonatal intensive care unit
Eun-Hwa Baek et al.
BMC INFECTIOUS DISEASES (2020)
Phenotypic zinc resistance does not correlate with antimicrobial multi-resistance in fecal E. coli isolates of piglets
Fereshteh Ghazisaeedi et al.
GUT PATHOGENS (2020)
Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single hospital
Daniel R. Evans et al.
ELIFE (2020)
Genomic and Phenotypic Analysis of an ESBL-ProducingE. coliST1159 Clonal Lineage From Wild Birds in Mongolia
Peter Schierack et al.
FRONTIERS IN MICROBIOLOGY (2020)
Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant Escherichia coli Lineage Sequence Type 648
Katharina Schaufler et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2019)
A Klebsiella pneumoniae Regulatory Mutant Has Reduced Capsule Expression but Retains Hypermucoviscosity
Kimberly A. Walker et al.
MBIO (2019)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
Hypervirulent Klebsiella pneumoniae
Thomas A. Russo et al.
CLINICAL MICROBIOLOGY REVIEWS (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years
Jane W. Marsh et al.
MBIO (2019)
Hybrid Resistance and Virulence Plasmids in High-Risk Clones of Klebsiella pneumoniae, Including Those Carrying blaNDM-5
Jane Turton et al.
MICROORGANISMS (2019)
Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
Kelly L. Wyres et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2019)
Extensively drug-resistant Klebsiella pneumoniae ST307 outbreak, north-eastern Germany, June to October 2019
Sebastian Haller et al.
EUROSURVEILLANCE (2019)
VFDB 2019: a comparative pathogenomic platform with an interactive web interface
Bo Liu et al.
NUCLEIC ACIDS RESEARCH (2019)
Hypervirulent Klebsiella pneumoniae (hypermucoviscous and aerobactin positive) infection over 6 years in the elderly in China: antimicrobial resistance patterns, molecular epidemiology and risk factor
Chao Liu et al.
ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
Ryan R. Wick et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2018)
Identification of Biomarkers for Differentiation of Hypervirulent Klebsiella pneumoniae from Classical K-pneumoniae
Thomas A. Russo et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2018)
A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study
Danxia Gu et al.
LANCET INFECTIOUS DISEASES (2018)
Increase of zinc resistance in German human derived livestock-associated MRSA between 2000 and 2014
Sarah van Alen et al.
VETERINARY MICROBIOLOGY (2018)
ESBL-plasmid carriage in E. coli enhances in vitro bacterial competition fitness and serum resistance in some strains of pandemic sequence types without overall fitness cost
Amit Ranjan et al.
GUT PATHOGENS (2018)
Whole-Genome-Sequencing characterization of bloodstream infection-causing hypervirulent Klebsiella pneumoniae of capsular serotype K2 and ST374
Xiaoli Wang et al.
VIRULENCE (2018)
Clinically Relevant ESBL-Producing K. pneumoniae ST307 and E. coli ST38 in an Urban West African Rat Population
Katharina Schaufler et al.
FRONTIERS IN MICROBIOLOGY (2018)
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
Margaret M. C. Lam et al.
GENOME MEDICINE (2018)
Characterization of the Desiccation Tolerance of Cronobacter sakazakii Strains
Xin-jun Du et al.
FRONTIERS IN MICROBIOLOGY (2018)
Successive Emergence of Ceftazidime-Avibactam Resistance through Distinct Genomic Adaptations in blaKPC-2-Harboring Klebsiella pneumoniae Sequence Type 307 Isolates
Marla J. Giddins et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2018)
Hypervirulent Klebsiella pneumoniae in Cryptogenic Liver Abscesses, Paris, France
Benjamin Rossi et al.
EMERGING INFECTIOUS DISEASES (2018)
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Margaret M. C. Lam et al.
MICROBIAL GENOMICS (2018)
Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Isolates, Houston, Texas: Unexpected Abundance of Clonal Group 307
S. Wesley Long et al.
MBIO (2017)
Hypervirulence and hypermucoviscosity: Two different but complementary Klebsiella spp. phenotypes?
Juan Carlos Catalan-Najera et al.
VIRULENCE (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Genomic and Molecular Characterization of Clinical Isolates of Enterobacteriaceae Harboring mcr-1 in Colombia, 2002 to 2016
Sandra Yamile Saavedra et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2017)
Metabolite Transporter PEG344 Is Required for Full Virulence of Hypervirulent Klebsiella pneumoniae Strain hvKP1 after Pulmonary but Not Subcutaneous Challenge
Jeffrey Bulger et al.
INFECTION AND IMMUNITY (2017)
Molecular Epidemiology of Colistin-Resistant, Carbapenemase-Producing Klebsiella pneumoniae in Serbia from 2013 to 2016
Katarina Novovic et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2017)
Outbreak of KPC-2-producing Enterobacteriaceae caused by clonal dissemination of Klebsiella pneumoniae ST307 carrying an IncX3-type plasmid harboring a truncated Tn4401a
Jung Ok Kim et al.
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2017)
The role of gyrA, gyrB, and dnaA functions in bacterial conjugation
Anna Marchese et al.
ANNALS OF MICROBIOLOGY (2016)
Klebsiella pneumoniae Liver Abscess: An Emerging Disease
Tasaduq Fazili et al.
AMERICAN JOURNAL OF THE MEDICAL SCIENCES (2016)
Carriage of Extended-Spectrum Beta-Lactamase-Plasmids Does Not Reduce Fitness but Enhances Virulence in Some Strains of Pandemic E-coli Lineages
Katharina Schaufler et al.
FRONTIERS IN MICROBIOLOGY (2016)
Draft Genome Sequences of Three Hypervirulent Carbapenem-Resistant Klebsiella pneumoniae Isolates from Bacteremia
Chaitra Shankar et al.
GENOME ANNOUNCEMENTS (2016)
ESBL-Producing Strain of Hypervirulent Kiebsiella pneumoniae K2, France
Laure Surgers et al.
EMERGING INFECTIOUS DISEASES (2016)
Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
Ryan R. Wick et al.
BIOINFORMATICS (2015)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
Michael Baym et al.
PLOS ONE (2015)
Genomic Epidemiology of an Endoscope-Associated Outbreak of Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae
Jane W. Marsh et al.
PLOS ONE (2015)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
CTX-M-15-D-ST648 Escherichia coli from companion animals and horses: another pandemic clone combining multiresistance and extraintestinal virulence?
Christa Ewers et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
BacMet: antibacterial biocide and metal resistance genes database
Chandan Pal et al.
NUCLEIC ACIDS RESEARCH (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
STATISTICAL QUESTION Multiple hypothesis testing and Bonferroni's correction
Philip Sedgwick
BMJ-BRITISH MEDICAL JOURNAL (2014)
Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria
Abiola O. Olaitan et al.
FRONTIERS IN MICROBIOLOGY (2014)
Using Tablet for visual exploration of second-generation sequencing data
Iain Milne et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Antimicrobial Resistance and Virulence: a Successful or Deleterious Association in the Bacterial World?
Alejandro Beceiro et al.
CLINICAL MICROBIOLOGY REVIEWS (2013)
ESBL-plasmids carrying toxin-antitoxin systems can be cured of wild-type Escherichia coli using a heat technique
Katharina Schaufler et al.
GUT PATHOGENS (2013)
Prevalent combination of virulence and plasmidic-encoded resistance in ST 131 Escherichia coli strains
Vera Calhau et al.
VIRULENCE (2013)
Hypervirulent (hypermucoviscous) Klebsiella pneumoniae A new and dangerous breed
Alyssa S. Shon et al.
VIRULENCE (2013)
Draft Genome Sequence of the Hypervirulent Klebsiella pneumoniae Strain hvKP1, Isolated in Buffalo, New York
Thomas A. Russo et al.
GENOME ANNOUNCEMENTS (2013)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
Complete Genome Sequence of the 2,3-Butanediol-Producing Klebsiella pneumoniae Strain KCTC 2242
Sang Heum Shin et al.
JOURNAL OF BACTERIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Extraintestinal pathogenic Escherichia coli: a combination of virulence with antibiotic resistance
Johann D. D. Pitout
FRONTIERS IN MICROBIOLOGY (2012)
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Nabil-Fareed Alikhan et al.
BMC GENOMICS (2011)
genoPlotR: comparative gene and genome visualization in R
Lionel Guy et al.
BIOINFORMATICS (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Co-selection of antibiotic and metal resistance
C Baker-Austin et al.
TRENDS IN MICROBIOLOGY (2006)
General mutagenesis of F plasmid TraI reveals its role in conjugative regulation
Rembrandt J. F. Haft et al.
JOURNAL OF BACTERIOLOGY (2006)
The EcoCyc database
PD Karp et al.
NUCLEIC ACIDS RESEARCH (2002)