Related references
Note: Only part of the references are listed.Detection in livestock of the human pandemic Escherichia coli ST131 fimH30(R) clone carrying blaCTX-M-27
Nicholas Duggett et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2021)
Characterizing Antimicrobial Resistant Escherichia coli and Associated Risk Factors in a Cross-Sectional Study of Pig Farms in Great Britain
Manal AbuOun et al.
FRONTIERS IN MICROBIOLOGY (2020)
Diversity of Plasmids and Genes Encoding Resistance to Extended Spectrum Cephalosporins in Commensal Escherichia coli From Dutch Livestock in 2007-2017
Daniela Ceccarelli et al.
FRONTIERS IN MICROBIOLOGY (2019)
Azithromycin resistance levels and mechanisms in Escherichia coli
Claudia Gomes et al.
SCIENTIFIC REPORTS (2019)
Use of whole genome sequencing of commensal Escherichia coli in pigs for antimicrobial resistance surveillance, United Kingdom, 2018
Emma Stubberfield et al.
EUROSURVEILLANCE (2019)
Molecular epidemiology of isolates with multiple mcr plasmids from a pig farm in Great Britain: the effects of colistin withdrawal in the short and long term
Nicholas A. Duggett et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2018)
Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance
Rebecca A. Weingarten et al.
MBIO (2018)
Genomic and functional characterisation of IncX3 plasmids encoding bla(SHV-12) in Escherichia coli from human and animal origin
Apostolos Liakopoulos et al.
SCIENTIFIC REPORTS (2018)
Characterization of plasmids harboring &ITbla&ITcCTX-M and &ITbla&ITCMY genes in &ITE. coli&IT from French broilers
Fabrice Touzain et al.
PLOS ONE (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2016
EFSA JOURNAL (2018)
Convergence of plasmid architectures drives emergence of multi-drug resistance in a clonally diverse Escherichia coli population from a veterinary clinical care setting
Sam Wagner et al.
VETERINARY MICROBIOLOGY (2017)
Loop-mediated isothermal amplification for extended spectrum β-lactamase gene detection in poultry carcase
M. Kirchner et al.
VETERINARY RECORD (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
blaCTX-M-27-Encoding Escherichia coli Sequence Type 131 Lineage C1-M27 Clone in Clinical Isolates, Germany
Hiren Ghosh et al.
EMERGING INFECTIOUS DISEASES (2017)
Colistin resistance in Salmonella and Escherichia coli isolates from a pig farm in Great Britain
Muna F. Anjum et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2016)
Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK
Michaela J. Day et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
Nicole Stoesser et al.
MBIO (2016)
Importation of Fosfomycin Resistance fosA3 Gene to Europe
Ana C. Mendes et al.
EMERGING INFECTIOUS DISEASES (2016)
Impact of Ciprofloxacin and Clindamycin Administration on Gram-Negative Bacteria Isolated from Healthy Volunteers and Characterization of the Resistance Genes They Harbor
Roderick M. Card et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
IncA/C Plasmid Carrying blaNDM-1, blaCMY-16, and fosA3 in a Salmonella enterica Serovar Corvallis Strain Isolated from a Migratory Wild Bird in Germany
L. Villa et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Prevalence of extended-spectrum-β-lactamase-producing Escherichia coli from pigs at slaughter in the UK in 2013
L. P. Randall et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
blaCTX-M-15-carrying Escherichia coli and Salmonella isolates from livestock and food in Germany
Jennie Fischer et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2014)
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
Michael Inouye et al.
GENOME MEDICINE (2014)
Antimicrobial resistance characteristics and fitness of Gram-negative fecal bacteria from volunteers treated with minocycline or amoxicillin
Miranda Kirchner et al.
FRONTIERS IN MICROBIOLOGY (2014)
Extended-spectrum-β-lactamase- and AmpC-β-lactamase-producing Escherichia coli in Dutch broilers and broiler farmers
Cindy Dierikx et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Microarray based comparative genotyping of gentamicin resistant Escherichia coli strains from food animals and humans
Ama Szmolka et al.
VETERINARY MICROBIOLOGY (2012)
The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria
Jean-Marie Pages et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Comparison of antimicrobial resistance genes in nontyphoidal Salmonellae of serotypes Enteritidis, Hadar, and Virchow from humans and food-producing animals in England and Wales
Katie L. Hopkins et al.
MICROBIAL DRUG RESISTANCE-MECHANISMS EPIDEMIOLOGY AND DISEASE (2007)
Extended-spectrum β-lactamases:: a clinical update
DL Paterson et al.
CLINICAL MICROBIOLOGY REVIEWS (2005)