Related references
Note: Only part of the references are listed.Dynamics of the 4D genome during in vivo lineage specification and differentiation
A. Marieke Oudelaar et al.
NATURE COMMUNICATIONS (2020)
A WIZ/Cohesin/CTCF Complex Anchors DNA Loops to Define Gene Expression and Cell Identity
Megan Justice et al.
CELL REPORTS (2020)
Spt5-mediated enhancer transcription directly couples enhancer activation with physical promoter interaction
Johanna Fitz et al.
NATURE GENETICS (2020)
The Interplay between Phase Separation and Gene-Enhancer Communication: A Theoretical Study
Andrea M. Chiariello et al.
BIOPHYSICAL JOURNAL (2020)
Transcription factors: building hubs in the 3D space
Dafne Campigli Di Giammartino et al.
CELL CYCLE (2020)
Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases
Leina Lu et al.
MOLECULAR CELL (2020)
Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers
Michiel J. Thiecke et al.
CELL REPORTS (2020)
Phase separation of ligand-activated enhancers licenses cooperative chromosomal enhancer assembly
Sreejith J. Nair et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Long-range enhancer-promoter contacts in gene expression control
Stefan Schoenfelder et al.
NATURE REVIEWS GENETICS (2019)
Acute depletion of CTCF directly affects MYC regulation through loss of enhancer-promoter looping
Judith Hyle et al.
NUCLEIC ACIDS RESEARCH (2019)
Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity
Jeffrey M. Alexander et al.
ELIFE (2019)
Preformed chromatin topology assists transcriptional robustness of Shh during limb development
Christina Paliou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
DOT1L inhibition reveals a distinct subset of enhancers dependent on H3K79 methylation
Laura Godfrey et al.
NATURE COMMUNICATIONS (2019)
A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers
Laila El Khattabi et al.
CELL (2019)
Enhancer Features that Drive Formation of Transcriptional Condensates
Krishna Shrinivas et al.
MOLECULAR CELL (2019)
Mechanisms of Interplay between Transcription Factors and the 3D Genome
Seungsoo Kim et al.
MOLECULAR CELL (2019)
Mediator Condensates Localize Signaling Factors to Key Cell Identity Genes
Alicia V. Zamudio et al.
MOLECULAR CELL (2019)
Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation
Nezha S. Benabdallah et al.
MOLECULAR CELL (2019)
Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
Yang Eric Guo et al.
NATURE (2019)
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock
Judhajeet Ray et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Organization of Chromatin by Intrinsic and Regulated Phase Separation
Bryan A. Gibson et al.
CELL (2019)
Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences
David T. McSwiggen et al.
GENES & DEVELOPMENT (2019)
Enhancer LncRNAs Influence Chromatin Interactions in Different Ways
Yue Hou et al.
FRONTIERS IN GENETICS (2019)
The interdependence of gene-regulatory elements and the 3D genome
Marit W. Vermunt et al.
JOURNAL OF CELL BIOLOGY (2019)
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers
Jian Yan et al.
CELL RESEARCH (2018)
Visualization of Transvection in Living Drosophila Embryos
Bomyi Lim et al.
MOLECULAR CELL (2018)
A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans
Pei-Fang Tsai et al.
MOLECULAR CELL (2018)
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis
Matthias Muhar et al.
SCIENCE (2018)
Imaging dynamic and selective low-complexity domain interactions that control gene transcription
Shasha Chong et al.
SCIENCE (2018)
Coactivator condensation at super-enhancers links phase separation and gene control
Benjamin R. Sabari et al.
SCIENCE (2018)
Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
Won-Ki Cho et al.
SCIENCE (2018)
Transcriptional Dysregulation of MYC Reveals Common Enhancer-Docking Mechanism
Jurian Schuijers et al.
CELL REPORTS (2018)
Transcription Elongation Can Affect Genome 3D Structure
Sven Heinz et al.
CELL (2018)
The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain
Ivelisse Cajigas et al.
MOLECULAR CELL (2018)
A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies
Carsten Bahr et al.
NATURE (2018)
Dynamic interplay between enhancer-promoter topology and gene activity
Hongtao Chen et al.
NATURE GENETICS (2018)
Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
Sergi Cuartero et al.
NATURE IMMUNOLOGY (2018)
RNA polymerase II clustering through carboxy-terminal domain phase separation
Marc Boehning et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
Ann Boija et al.
CELL (2018)
Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome
Yongdae Shin et al.
CELL (2018)
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
A. Marieke Oudelaar et al.
NATURE GENETICS (2018)
SRPK1 maintains acute myeloid leukemia through effects on isoform usage of epigenetic regulators including BRD4
Konstantinos Tzelepis et al.
NATURE COMMUNICATIONS (2018)
Developmental enhancers and chromosome topology
Eileen E. M. Furlong et al.
SCIENCE (2018)
MLL-AF4 binds directly to a BCL-2 specific enhancer and modulates H3K27 acetylation
Laura Godfrey et al.
EXPERIMENTAL HEMATOLOGY (2017)
Two independent modes of chromatin organization revealed by cohesin removal
Wibke Schwarzer et al.
NATURE (2017)
Structural basis of PROTAC cooperative recognition for selective protein degradation
Morgan S. Gadd et al.
NATURE CHEMICAL BIOLOGY (2017)
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
Maxwell R. Mumbach et al.
NATURE GENETICS (2017)
How best to identify chromosomal interactions: a comparison of approaches
James O. J. Davies et al.
NATURE METHODS (2017)
MLL3/MLL4 are required for CBP/p300 binding on enhancers and super-enhancer formation in brown adipogenesis
Binbin Lai et al.
NUCLEIC ACIDS RESEARCH (2017)
Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping
Stefanie L. Morgan et al.
NATURE COMMUNICATIONS (2017)
MLL-AF4 Spreading Identifies Binding Sites that Are Distinct from Super-Enhancers and that Govern Sensitivity to DOT1L Inhibition in Leukemia
Jon Kerry et al.
CELL REPORTS (2017)
YY1 Is a Structural Regulator of Enhancer-Promoter Loops
Abraham S. Weintraub et al.
CELL (2017)
Cohesin Loss Eliminates All Loop Domains
Suhas S. P. Rao et al.
CELL (2017)
Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate
Takeshi Isoda et al.
CELL (2017)
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
Elphege P. Nora et al.
CELL (2017)
The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension
Judith H. I. Haarhuis et al.
CELL (2017)
A Phase Separation Model for Transcriptional Control
Denes Hnisz et al.
CELL (2017)
Multiplexed analysis of chromosome conformation at vastly improved sensitivity
James O. J. Davies et al.
NATURE METHODS (2016)
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
Hannah K. Long et al.
CELL (2016)
Polar Positioning of Phase-Separated Liquid Compartments in Cells Regulated by an mRNA Competition Mechanism
Shambaditya Saha et al.
CELL (2016)
Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
Caroline R. Bartman et al.
MOLECULAR CELL (2016)
UMI-4C for quantitative and targeted chromosomal contact profiling
Omer Schwartzman et al.
NATURE METHODS (2016)
Functional interdependence of BRD4 and DOT1L in MLL leukemia
Omer Gilan et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Functional interdependence of BRD4 and DOT1L in MLL leukemia
Omer Gilan et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Formation of Chromosomal Domains by Loop Extrusion
Geoffrey Fudenberg et al.
CELL REPORTS (2016)
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
Ya Guo et al.
CELL (2015)
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
Stefan Schoenfelder et al.
GENOME RESEARCH (2015)
CTCF Binding Polarity Determines Chromatin Looping
Elzo de Wit et al.
MOLECULAR CELL (2015)
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
Borbala Mifsud et al.
NATURE GENETICS (2015)
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
Adrian L. Sanborn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
Wulan Deng et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation
Chen-Lin Hsieh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome
David A. Orlando et al.
CELL REPORTS (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
Jakob Loven et al.
CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation
Junwei Shi et al.
GENES & DEVELOPMENT (2013)
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
Wenbo Li et al.
NATURE (2013)
A high-resolution map of the three-dimensional chromatin interactome in human cells
Fulai Jin et al.
NATURE (2013)
RUNX1 Is a Key Target in t(4;11) Leukemias that Contributes to Gene Activation through an AF4-MLL Complex Interaction
Adam C. Wilkinson et al.
CELL REPORTS (2013)
Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
Wulan Deng et al.
CELL (2012)
RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia
Johannes Zuber et al.
NATURE (2011)
Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia
Mark A. Dawson et al.
NATURE (2011)
The Dynamic Architecture of Hox Gene Clusters
Daan Noordermeer et al.
SCIENCE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
Mediator and cohesin connect gene expression and chromatin architecture
Michael H. Kagey et al.
NATURE (2010)
CDK8 is a positive regulator of transcriptional elongation within the serum response network
Aaron J. Donner et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
An oestrogen-receptor-α-bound human chromatin interactome
Melissa J. Fullwood et al.
NATURE (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Transcription factors mediate long-range enhancer-promoter interactions
Ilias K. Nolis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Maintenance of Long-Range DNA Interactions after Inhibition of Ongoing RNA Polymerase II Transcription
Robert-Jan Palstra et al.
PLOS ONE (2008)
The double bromodomain-containing chromatin adaptor Brd4 and transcriptional regulation
Shwu-Yuan Wu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription
MK Jang et al.
MOLECULAR CELL (2005)
The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion
K Ribbeck et al.
EMBO JOURNAL (2002)
Share Paper
