4.8 Article

Induced organoids derived from patients with ulcerative colitis recapitulate colitic reactivity

Related references

Note: Only part of the references are listed.
Article Gastroenterology & Hepatology

Enteroendocrine Cells: Sensing Gut Microbiota and Regulating Inflammatory Bowel Diseases

Yanbo Yu et al.

INFLAMMATORY BOWEL DISEASES (2020)

Article Biochemical Research Methods

Simulation, power evaluation and sample size recommendation for single-cell RNA-seq

Kenong Su et al.

BIOINFORMATICS (2020)

Article Cell Biology

Differentiation of Human Intestinal Organoids with Endogenous Vascular Endothelial Cells

Emily M. Holloway et al.

DEVELOPMENTAL CELL (2020)

Article Multidisciplinary Sciences

Colonic epithelial cell diversity in health and inflammatory bowel disease

Kaushal Parikh et al.

NATURE (2019)

Article Cell Biology

PAI-1 augments mucosal damage in colitis

Gerard E. Kaiko et al.

SCIENCE TRANSLATIONAL MEDICINE (2019)

Article Multidisciplinary Sciences

Differentiated fibrocytes assume a functional mesenchymal phenotype with regenerative potential

Changying Ling et al.

SCIENCE ADVANCES (2019)

Article Biochemistry & Molecular Biology

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Christopher S. Smillie et al.

Article Multidisciplinary Sciences

Conserved transcriptomic profile between mouse and human colitis allows unsupervised patient stratification

Paulo Czarnewski et al.

NATURE COMMUNICATIONS (2019)

Article Gastroenterology & Hepatology

Fibrosis Mediators in the Colonic Mucosa of Acute and Healed Ulcerative Colitis

Mona Dixon Gundersen et al.

CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY (2019)

Review Gastroenterology & Hepatology

Tales from the crypt: new insights into intestinal stem cells

Helmuth Gehart et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2019)

Article Gastroenterology & Hepatology

A Novel Gastric Spheroid Co-culture Model Reveals Chemokine-Dependent Recruitment of Human Dendritic Cells to the Gastric Epithelium

Thomas A. Sebrell et al.

CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2019)

Article Cell Biology

Cell Biology of Tight Junction Barrier Regulation and Mucosal Disease

Aaron Buckley et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2018)

Article Biotechnology & Applied Microbiology

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler et al.

NATURE BIOTECHNOLOGY (2018)

Editorial Material Multidisciplinary Sciences

Intestinal barriers protect against disease

Sandra Citi

SCIENCE (2018)

Article Biochemistry & Molecular Biology

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease

James Kinchen et al.

Review Clinical Neurology

Using Patient-Derived Induced Pluripotent Stem Cells to Identify Parkinson's Disease-Relevant Phenotypes

S. L. Sison et al.

CURRENT NEUROLOGY AND NEUROSCIENCE REPORTS (2018)

Review Immunology

Type 2 immunity in tissue repair and fibrosis

Richard L. Gieseck et al.

NATURE REVIEWS IMMUNOLOGY (2018)

Review Gastroenterology & Hepatology

The intestinal epithelial barrier: a therapeutic target?

Matthew A. Odenwald et al.

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2017)

Article Biochemical Research Methods

Massively parallel single-nucleus RNA-seq with DroNc-seq

Naomi Habib et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Single-cell mRNA quantification and differential analysis with Census

Xiaojie Qiu et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Reversed graph embedding resolves complex single-cell trajectories

Xiaojie Qiu et al.

NATURE METHODS (2017)

Review Medicine, Research & Experimental

Role of the CXCL8-CXCR1/2 Axis in Cancer and Inflammatory Diseases

Helen Ha et al.

THERANOSTICS (2017)

Article Multidisciplinary Sciences

Real-time Measurement of Epithelial Barrier Permeability in Human Intestinal Organoids

David R. Hill et al.

JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2017)

Article Multidisciplinary Sciences

Expression profile of intestinal stem cell markers in colitis-associated carcinogenesis

Hye Sung Kim et al.

SCIENTIFIC REPORTS (2017)

Article Biochemistry & Molecular Biology

The pro-inflammatory cytokines IFNγ/TNFα increase chromogranin A-positive neuroendocrine cells in the colonic epithelium

Jose Antonio Hernandez-Trejo et al.

BIOCHEMICAL JOURNAL (2016)

Article Biochemical Research Methods

MultiQC: summarize analysis results for multiple tools and samples in a single report

Philip Ewels et al.

BIOINFORMATICS (2016)

Review Biochemistry & Molecular Biology

The CXCL8-CXCR1/2 pathways in cancer

Qian Liu et al.

CYTOKINE & GROWTH FACTOR REVIEWS (2016)

Article Gastroenterology & Hepatology

Fibrotic and Vascular Remodelling of Colonic Wall in Patients with Active Ulcerative Colitis

Chiara Ippolito et al.

JOURNAL OF CROHNS & COLITIS (2016)

Review Cardiac & Cardiovascular Systems

Translation of Human-Induced Pluripotent Stem Cells From Clinical Trial in a Dish to Precision Medicine

Nazish Sayed et al.

JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY (2016)

Article Multidisciplinary Sciences

Cross-talk between intestinal epithelial cells and immune cells in inflammatory bowel disease

Sara Al-Ghadban et al.

SCIENTIFIC REPORTS (2016)

Editorial Material Gastroenterology & Hepatology

Regional identity of gut stem cells -one gene to rule them all

James M. Wells

NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2015)

Article Biochemistry & Molecular Biology

An in vivo model of human small intestine using pluripotent stem cells

Carey L. Watson et al.

NATURE MEDICINE (2014)

Review Immunology

Animal models of inflammatory bowel disease: a review

Nidhi Goyal et al.

INFLAMMOPHARMACOLOGY (2014)

Review Gastroenterology & Hepatology

Histological evaluation in ulcerative colitis

Tom C. DeRoche et al.

GASTROENTEROLOGY REPORT (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Medicine, General & Internal

Vedolizumab as Induction and Maintenance Therapy for Ulcerative Colitis

Brian G. Feagan et al.

NEW ENGLAND JOURNAL OF MEDICINE (2013)

Article Biochemistry & Molecular Biology

TNF-α-induced down-regulation of CDX2 suppresses MEP1A expression in colitis

Mehrnet Coskun et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2012)

Review Biochemistry & Molecular Biology

The many faces and functions of β-catenin

Tomas Valenta et al.

EMBO JOURNAL (2012)

Article Biochemistry & Molecular Biology

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow et al.

GENOME RESEARCH (2012)

Article Medicine, General & Internal

Ulcerative colitis

Ingrid Ordas et al.

LANCET (2012)

Article Multidisciplinary Sciences

Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro

Jason R. Spence et al.

NATURE (2011)

Article Biochemical Research Methods

Generating human intestinal tissue from pluripotent stem cells in vitro

Kyle W. McCracken et al.

NATURE PROTOCOLS (2011)

Review Medicine, General & Internal

MEDICAL PROGRESS Ulcerative Colitis

Silvio Danese et al.

NEW ENGLAND JOURNAL OF MEDICINE (2011)

Article Multidisciplinary Sciences

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek et al.

PLOS ONE (2011)

Review Cell Biology

Adherens junctions: from molecules to morphogenesis

Tony J. C. Harris et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Gastroenterology & Hepatology

Plasma Chromogranin A in Patients with Inflammatory Bowel Disease

Valentina Sciolo et al.

INFLAMMATORY BOWEL DISEASES (2009)

Article Engineering, Biomedical

Synthesis and characterization of tyramine-based hyaluronan hydrogels

Aniq Darr et al.

JOURNAL OF MATERIALS SCIENCE-MATERIALS IN MEDICINE (2009)

Article Oncology

The Interleukin-8 Pathway in Cancer

David J. J. Waugh et al.

CLINICAL CANCER RESEARCH (2008)

Article Gastroenterology & Hepatology

Mucosal healing in inflammatory bowel disease: impossible ideal or therapeutic target?

Paul Rutgeerts et al.

Article Medicine, General & Internal

Infliximab for induction and maintenance therapy for ulcerative colitis

P Rutgeerts et al.

NEW ENGLAND JOURNAL OF MEDICINE (2005)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Reactome: a knowledgebase of biological pathways

G Joshi-Tope et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Medicine, Research & Experimental

A porous defense: the leaky epithelial barrier in intestinal disease

DR Clayburgh et al.

LABORATORY INVESTIGATION (2004)

Article Biochemistry & Molecular Biology

Ligand selectivity and affinity of chemokine receptor CXCR1 -: Role of N-terminal domain

L Rajagopalan et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)