4.8 Article

Crystal structure of steroid reductase SRD5A reveals conserved steroid reduction mechanism

Journal

NATURE COMMUNICATIONS
Volume 12, Issue 1, Pages -

Publisher

NATURE PORTFOLIO
DOI: 10.1038/s41467-020-20675-2

Keywords

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Funding

  1. National Key R&D Program of China from the Ministry of Science and Technology [2018YFA0508200, 2016YFA0502700]
  2. National Natural Science Foundation of China [31971218, 21505134]
  3. Strategic Priority Research Program of Chinese Academy of Sciences [XDB19000000]
  4. Science, Technology and Innovation Commission of Shenzhen Municipality [JCYJ-20180307151618765, JCYJ-20180508163206306]
  5. Kobilka Institute of Innovative Drug Discovery and Presidential Fellowship at the Chinese University of Hong Kong, Shenzhen
  6. Ganghong Youth Scholarship in CUHKSZ

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The crystal structure of PbSRD5A from Proteobacteria bacterium, a homolog of both SRD5A1 and SRD5A2, was reported, revealing the substrate binding pocket and NADPH mediated mechanism of steroids 3-oxo-Delta(4) reduction. This provides insights into the design of therapeutic molecules targeting SRD5As with improved specificity and therapeutic efficacy.
Steroid hormones are essential in stress response, immune system regulation, and reproduction in mammals. Steroids with 3-oxo-Delta (4) structure, such as testosterone or progesterone, are catalyzed by steroid 5 alpha -reductases (SRD5As) to generate their corresponding 3-oxo-5 alpha steroids, which are essential for multiple physiological and pathological processes. SRD5A2 is already a target of clinically relevant drugs. However, the detailed mechanism of SRD5A-mediated reduction remains elusive. Here we report the crystal structure of PbSRD5A from Proteobacteria bacterium, a homolog of both SRD5A1 and SRD5A2, in complex with the cofactor NADPH at 2.0 angstrom resolution. PbSRD5A exists as a monomer comprised of seven transmembrane segments (TMs). The TM1-4 enclose a hydrophobic substrate binding cavity, whereas TM5-7 coordinate cofactor NADPH through extensive hydrogen bonds network. Homology-based structural models of HsSRD5A1 and -2, together with biochemical characterization, define the substrate binding pocket of SRD5As, explain the properties of disease-related mutants and provide an important framework for further understanding of the mechanism of NADPH mediated steroids 3-oxo-Delta (4) reduction. Based on these analyses, the design of therapeutic molecules targeting SRD5As with improved specificity and therapeutic efficacy would be possible. Steroid 5 alpha -reductase 2 (SRD5A2), a testosterone metabolism enzyme, is implicated in human disease. Structural and biochemical analyses of PbSRD5A, a bacterial homolog, reveal SRD5A2 substrate binding pocket and provide framework for the design of new drugs targeting this enzyme.

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