4.8 Article

Selection enhances protein evolvability by increasing mutational robustness and foldability

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

The Causes and Consequences of Genetic Interactions (Epistasis)

Júlia Domingo et al.

Annual Review of Genomics and Human Genetics (2019)

Article Multidisciplinary Sciences

Higher-fitness yeast genotypes are less robust to deleterious mutations

Milo S. Johnson et al.

SCIENCE (2019)

Review Genetics & Heredity

The causes of evolvability and their evolution

Joshua L. Payne et al.

NATURE REVIEWS GENETICS (2019)

Article Biochemistry & Molecular Biology

SWISS-MODEL: homology modelling of protein structures and complexes

Andrew Waterhouse et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Destabilizing mutations encode nongenetic variation that drives evolutionary innovation

Katherine L. Petrie et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Hsp90 shapes protein and RNA evolution to balance trade-offs between protein stability and aggregation

Ron Geller et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Alternative evolutionary histories in the sequence space of an ancient protein

Tyler N. Starr et al.

NATURE (2017)

Article Evolutionary Biology

Enhancing effect of phenotype mutational robustness on adaptation in Escherichia coli

Emanuele Rigato et al.

JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2016)

Article Biochemistry & Molecular Biology

De Novo Evolutionary Emergence of a Symmetrical Protein Is Shaped by Folding Constraints

Robert G. Smock et al.

Article Multidisciplinary Sciences

On the (un) predictability of a large intragenic fitness landscape

Claudia Bank et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Environmental changes bridge evolutionary valleys

Barrett Steinberg et al.

SCIENCE ADVANCES (2016)

Article Biochemistry & Molecular Biology

Evolvability as a Function of Purifying Selection in TEM-1 β-Lactamase

Michael A. Stiffler et al.

Article Multidisciplinary Sciences

Mistranslation drives the evolution of robustness in TEM-1 β-lactamase

Sinisa Bratulic et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemical Research Methods

Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations

Liat Rockah-Shmuel et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemical Research Methods

PAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data

Wei Shao et al.

JOURNAL OF VIROLOGICAL METHODS (2014)

Article Biochemistry & Molecular Biology

Genomic mining of prokaryotic repressors for orthogonal logic gates

Brynne C. Stanton et al.

NATURE CHEMICAL BIOLOGY (2014)

Review Genetics & Heredity

Cryptic genetic variation: evolution's hidden substrate

Annalise B. Paaby et al.

NATURE REVIEWS GENETICS (2014)

Article Multidisciplinary Sciences

Long-read, whole-genome shotgun sequence data for five model organisms

Kristi E. Kim et al.

SCIENTIFIC DATA (2014)

Article Chemistry, Multidisciplinary

Improving the Second-Order Nonlinear Optical Response of Fluorescent Proteins: The Symmetry Argument

Evelien De Meulenaere et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)

Review Genetics & Heredity

Evaluating evolutionary models of stress-induced mutagenesis in bacteria

R. Craig MacLean et al.

NATURE REVIEWS GENETICS (2013)

Review Microbiology

The role of mutational robustness in RNA virus evolution

Adam S. Lauring et al.

NATURE REVIEWS MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Chemical chaperones assist intracellular folding to buffer mutational variations

Anannya Bandyopadhyay et al.

NATURE CHEMICAL BIOLOGY (2012)

Article Biochemical Research Methods

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

Evolution of Prokaryotic Genes by Shift of Stop Codons

Anna A. Vakhrusheva et al.

JOURNAL OF MOLECULAR EVOLUTION (2011)

Article Multidisciplinary Sciences

Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

Eric J. Hayden et al.

NATURE (2011)

Review Biochemistry & Molecular Biology

Protein kinetic stability

Jose M. Sanchez-Ruiz

BIOPHYSICAL CHEMISTRY (2010)

Review Genetics & Heredity

Mutational effects and the evolution of new protein functions

Misha Soskine et al.

NATURE REVIEWS GENETICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

Stability effects of mutations and protein evolvability

Nobuhiko Tokuriki et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)

Article Multidisciplinary Sciences

Chaperonin overexpression promotes genetic variation and enzyme evolution

Nobuhiko Tokuriki et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Intense neutral drifts yield robust and evolvable consensus proteins

Shimon Bershtein et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Ohno's Model Revisited: Measuring the Frequency of Potentially Adaptive Mutations under Various Mutational Drifts

Shimon Bershtein et al.

MOLECULAR BIOLOGY AND EVOLUTION (2008)

Article Biochemical Research Methods

Directed enzyme evolution via small and effective neutral drift libraries

Rinkoo D. Gupta et al.

NATURE METHODS (2008)

Review Genetics & Heredity

Opinion - Is evolvability evolvable?

Massimo Pigliucci

NATURE REVIEWS GENETICS (2008)

Review Genetics & Heredity

Rates of evolutionary change in viruses: patterns and determinants

Siobain Duffy et al.

NATURE REVIEWS GENETICS (2008)

Article Biochemical Research Methods

How Protein Stability and New Functions Trade Off

Nobuhiko Tokuriki et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Multidisciplinary Sciences

Evolution of a fluorinated green fluorescent protein

Tale Hyeon Yoo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein

Shimon Bershtein et al.

NATURE (2006)

Article Multidisciplinary Sciences

Protein stability promotes evolvability

JD Bloom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Darwinian evolution can follow only very few mutational paths to fitter proteins

DM Weinreich et al.

SCIENCE (2006)

Article Biotechnology & Applied Microbiology

Engineering and characterization of a superfolder green fluorescent protein

JD Pedelacq et al.

NATURE BIOTECHNOLOGY (2006)

Review Biochemistry & Molecular Biology

Mechanisms of protein fluorophore formation and engineering

A Miyawaki et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2003)

Article Multidisciplinary Sciences

Stress-induced mutagenesis in bacteria

I Bjedov et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

Why are proteins marginally stable?

DM Taverna et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2002)