4.8 Article

Histone H3K27 dimethylation landscapes contribute to genome stability and genetic recombination during wheat polyploidization

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice

Alexandre P. Marand et al.

PLANT CELL (2019)

Article Genetics & Heredity

Durum wheat genome highlights past domestication signatures and future improvement targets

Marco Maccaferri et al.

NATURE GENETICS (2019)

Review Biochemistry & Molecular Biology

Chromatin Remodeling and Epigenetic Regulation in Plant DNA Damage Repair

Jin-Hong Kim

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Biology

Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes

Sarah Marburger et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)

Article Multidisciplinary Sciences

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

Hong-Qing Ling et al.

NATURE (2018)

Article Multidisciplinary Sciences

The transcriptional landscape of polyploid wheat

R. H. Ramirez-Gonzalez et al.

SCIENCE (2018)

Article Agronomy

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B

Jan Dvorak et al.

THEORETICAL AND APPLIED GENETICS (2018)

Article Multidisciplinary Sciences

Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin

Cuijun Zhang et al.

NATURE COMMUNICATIONS (2018)

Article Biotechnology & Applied Microbiology

Genome-wide analyses reveal a role of Polycomb in promoting hypomethylation of DNA methylation valleys

Yuanyuan Li et al.

GENOME BIOLOGY (2018)

Article Multidisciplinary Sciences

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

Ming-Cheng Luo et al.

NATURE (2017)

Article Multidisciplinary Sciences

Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize

Yan He et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Genetics & Heredity

Silencing of Transposable Elements by piRNAs in Drosophila: An Evolutionary Perspective

Shiqi Luo et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2017)

Article Biotechnology & Applied Microbiology

Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato

Alexandre P. Marand et al.

GENOME BIOLOGY (2017)

Article Biochemistry & Molecular Biology

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2016)

Editorial Material Plant Sciences

The wondrous cycles of polyploidy in plants

Jonathan F. Wendel

AMERICAN JOURNAL OF BOTANY (2015)

Article Biochemistry & Molecular Biology

The MEME Suite

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Plant Sciences

THE POLYPLOIDY REVOLUTION THEN...AND NOW: STEBBINS REVISITED

Douglas E. Soltis et al.

AMERICAN JOURNAL OF BOTANY (2014)

Article Biochemistry & Molecular Biology

Redundant Mechanisms to Form Silent Chromatin at Pericentromeric Regions Rely on BEND3 and DNA Methylation

Nehme Saksouk et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

Polycomb-Dependent H3K27me1 and H3K27me2 Regulate Active Transcription and Enhancer Fidelity

Karin J. Ferrari et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

Accessible DNA and Relative Depletion of H3K9me2 at Maize Loci Undergoing RNA-Directed DNA Methylation

Jonathan I. Gent et al.

PLANT CELL (2014)

Article Biochemistry & Molecular Biology

Evolution of the BBAA Component of Bread Wheat during Its History at the Allohexaploid Level

Huakun Zhang et al.

PLANT CELL (2014)

Article Multidisciplinary Sciences

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

Klaus F. X. Mayer et al.

SCIENCE (2014)

Article Biotechnology & Applied Microbiology

Organization and evolution of transposable elements along the bread wheat chromosome 3B

Josquin Daron et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis

Cathy Melamed-Bessudo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Loss of DNA methylation affects the recombination landscape in Arabidopsis

Marie Mirouze et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Distinct modes of DNA accessibility in plant chromatin

Huan Shu et al.

NATURE COMMUNICATIONS (2012)

Article Biochemistry & Molecular Biology

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

Francois Roudier et al.

EMBO JOURNAL (2011)

Review Plant Sciences

Histone Methylation in Higher Plants

Chunyan Liu et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 61 (2010)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

Guangming He et al.

PLANT CELL (2010)

Article Multidisciplinary Sciences

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

F. Baudat et al.

SCIENCE (2010)

Review Plant Sciences

Molecular mechanisms of polyploidy and hybrid vigor

Z. Jeffrey Chen

TRENDS IN PLANT SCIENCE (2010)

Review Biochemistry & Molecular Biology

Transposable elements: powerful facilitators of evolution

Keith R. Oliver et al.

BIOESSAYS (2009)

Article Multidisciplinary Sciences

The Sorghum bicolor genome and the diversification of grasses

Andrew H. Paterson et al.

NATURE (2009)

Article Multidisciplinary Sciences

The frequency of polyploid speciation in vascular plants

Troy E. Wood et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Biochemistry & Molecular Biology

Genomic clues to the evolutionary success of review polyploid plants

Matthew J. Hegarty et al.

CURRENT BIOLOGY (2008)

Editorial Material Multidisciplinary Sciences

Perspective - Genomic plasticity and the diversity of polyploid plants

A. R. Leitch et al.

SCIENCE (2008)

Review Plant Sciences

Managing meiotic recombination in plant breeding

Erik Wijnker et al.

TRENDS IN PLANT SCIENCE (2008)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)

Review Plant Sciences

Chromosomal histone modification patterns - from conservation to diversity

Joerg Fuchs et al.

TRENDS IN PLANT SCIENCE (2006)

Review Genetics & Heredity

The advantages and disadvantages of being polyploid

L Comai

NATURE REVIEWS GENETICS (2005)

Article Multidisciplinary Sciences

The map-based sequence of the rice genome

T Matsumoto et al.

NATURE (2005)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)

Article Plant Sciences

The impact of polyploidy on grass genome evolution

AA Levy et al.

PLANT PHYSIOLOGY (2002)

Article Multidisciplinary Sciences

Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

HS Lee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)