4.6 Review

Polyploid phylogenetics

Journal

NEW PHYTOLOGIST
Volume 230, Issue 1, Pages 66-72

Publisher

WILEY
DOI: 10.1111/nph.17105

Keywords

allopolyploidy; alloPPnet; PADRE; polyploid macroevolution; polyploid network; polyploid speciation; PURC; whole-genome duplication

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Funding

  1. University Herbarium
  2. Department of Integrative Biology at UC Berkeley

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Polyploidy is a prominent feature in current plant diversity, with ongoing debates on whether it plays a crucial role in long-term evolution. The emerging field of 'polyploid phylogenetics' has provided researchers with opportunities to study the evolutionary history of polyploid lineages, laying the foundation for mechanistic models of ploidy change. This advancement also allows for a more comprehensive analysis of plant taxa in general.
Polyploidy is a dominant feature of extant plant diversity. However, major research questions, including whether polyploidy is important to long-term evolution or is just 'evolutionary noise', remain unresolved due to difficulties associated with the generation and analysis of data from polyploid lineages. Many of these difficulties have been recently overcome, such that it is now often relatively straightforward to infer the full and often reticulate phylogenetic history of groups with recently formed polyploids. This nascent field of 'polyploid phylogenetics' allows researchers to tackle long-standing questions of polyploid macroevolution, supplies the foundation for mechanistic models of ploidy change, and provides the opportunity to include a more complete and representative sample of plant taxa in our analyses in general.

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