Related references
Note: Only part of the references are listed.Giant virus diversity and host interactions through global metagenomics
Frederik Schulz et al.
NATURE (2020)
Dynamic genome evolution and complex virocell metabolism of globally-distributed giant viruses
Mohammad Moniruzzaman et al.
NATURE COMMUNICATIONS (2020)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions
Alessandro W. Rossoni et al.
ELIFE (2019)
Strong Purifying Selection Is Associated with Genome Streamlining in Epipelagic Marinimicrobia
Carolina Alejandra Martinez-Gutierrez et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Diversification of giant and large eukaryotic dsDNA viruses predated the origin of modern eukaryotes
Julien Guglielmini et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
A giant virus infecting green algae encodes key fermentation genes
Christopher R. Schvarcz et al.
VIROLOGY (2018)
Tailed giant Tupanvirus possesses the most complete translational apparatus of the known virosphere
Jonatas Abrahao et al.
NATURE COMMUNICATIONS (2018)
The depths of virus exaptation
Eugene V. Koonin et al.
CURRENT OPINION IN VIROLOGY (2018)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
A Glimpse of Nucleo-Cytoplasmic Large DNA Virus Biodiversity through the Eukaryotic GenomicsWindow
Lucie Gallot-Lavallee et al.
VIRUSES-BASEL (2017)
Marine Prasinoviruses and Their Tiny Plankton Hosts: A Review
Karen D. Weynberg et al.
VIRUSES-BASEL (2017)
A Student's Guide to Giant Viruses Infecting Small Eukaryotes: From Acanthamoeba to Zooxanthellae
Steven W. Wilhelm et al.
VIRUSES-BASEL (2017)
Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics
Mohammad Moniruzzaman et al.
NATURE COMMUNICATIONS (2017)
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2016)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
Giant viruses come of age
Matthias G. Fischer
CURRENT OPINION IN MICROBIOLOGY (2016)
Giant viruses and the origin of modern eukaryotes
Patrick Forterre et al.
CURRENT OPINION IN MICROBIOLOGY (2016)
Study of Gene Trafficking between Acanthamoeba and Giant Viruses Suggests an Undiscovered Family of Amoeba-Infecting Viruses
Florian Maumus et al.
GENOME BIOLOGY AND EVOLUTION (2016)
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Simon Roux et al.
NATURE (2016)
Comparative Genomics of a Bacterivorous Green Alga Reveals Evolutionary Causalities and Consequences of Phago-Mixotrophic Mode of Nutrition
John A. Burns et al.
GENOME BIOLOGY AND EVOLUTION (2015)
The Autonomous Glycosylation of Large DNA Viruses
Francesco Piacente et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus
Chantal Abergel et al.
FEMS MICROBIOLOGY REVIEWS (2015)
circlize implements and enhances circular visualization in R
Zuguang Gu et al.
BIOINFORMATICS (2014)
Multiple occurrences of giant virus core genes acquired by eukaryotic genomes: The visible part of the iceberg?
Jonathan Filee
VIROLOGY (2014)
Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses
Adrien Jeanniard et al.
BMC GENOMICS (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Endogenous viruses: insights into viral evolution and impact on host biology
Cedric Feschotte et al.
NATURE REVIEWS GENETICS (2012)
The NCBI Taxonomy database
Scott Federhen
NUCLEIC ACIDS RESEARCH (2012)
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
Marcus Lechner et al.
BMC BIOINFORMATICS (2011)
The Evolution of Endogenous Viral Elements
Edward C. Holmes
CELL HOST & MICROBE (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
J. Mark Cock et al.
NATURE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Acquisition of prokaryotic genes by fungal genomes
Marina Marcet-Houben et al.
TRENDS IN GENETICS (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
Natalya Yutin et al.
VIROLOGY JOURNAL (2009)
The genome of the brown alga Ectocarpus siliculosus contains a series of viral DNA pieces, suggesting an ancient association with large dsDNA viruses
Nicolas Delaroque et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Phylogenetic evidence for extensive lateral acquisition of cellular genes by Nucleocytoplasmic large DNA viruses
Jonathan Filee et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Horizontal gene transfer in eukaryotic evolution
Patrick J. Keeling et al.
NATURE REVIEWS GENETICS (2008)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
I am what I eat and I eat what I am: acquisition of bacterial genes by giant viruses
Jonathan Filee et al.
TRENDS IN GENETICS (2007)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Complete genome sequence and lytic phase transcription profile of a Coccolithovirus
WH Wilson et al.
SCIENCE (2005)
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
M Stanke et al.
NUCLEIC ACIDS RESEARCH (2005)
Automated de novo identification of repeat sequence families in sequenced genomes
ZR Bao et al.
GENOME RESEARCH (2002)
Fast algorithms for large-scale genome alignment and comparison
AL Delcher et al.
NUCLEIC ACIDS RESEARCH (2002)
TIGRFAMs: a protein family resource for the functional identification of proteins
DH Haft et al.
NUCLEIC ACIDS RESEARCH (2001)
Lateral gene transfer and the nature of bacterial innovation
H Ochman et al.
NATURE (2000)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
