Related references
Note: Only part of the references are listed.RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
PthA4AT, a 7.5-repeats transcription activator-like (TAL) effector from Xanthomonas citri ssp. citri, triggers citrus canker resistance
Roxana Andrea Roeschlin et al.
MOLECULAR PLANT PATHOLOGY (2019)
Gene gain and loss push prokaryotes beyond the homologous recombination barrier and accelerate genome sequence divergence
Jaime Iranzo et al.
NATURE COMMUNICATIONS (2019)
Pacbio sequencing of copper-tolerant Xanthomonas citri reveals presence of a chimeric plasmid structure and provides insights into reassortment and shuffling of transcription activator-like effectors among X. citri strains
Alberto M. Gochez et al.
BMC GENOMICS (2018)
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia
Zhemin Zhou et al.
CURRENT BIOLOGY (2018)
Going around in circles: virulence plasmids in enteric pathogens
Giulia Pilla et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean
Nicolas W. G. Chen et al.
BMC GENOMICS (2018)
Genomics of the origin and evolution of Citrus
Guohong Albert Wu et al.
NATURE (2018)
TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
Adrien Rieux et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Prokaryote genome fluidity is dependent on effective population size
Nadia Andrea Andreani et al.
ISME JOURNAL (2017)
Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements
D. Richard et al.
MOLECULAR ECOLOGY (2017)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Martin Steinegger et al.
NATURE BIOTECHNOLOGY (2017)
Sampling the mobile gene pool: innovation via horizontal gene transfer in bacteria
James P. J. Hall et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
First Report of Copper-resistant Xanthomonas citri pv. citri Pathotype A Causing Asiatic Citrus Canker in Reunion, France
D. Richard et al.
PLANT DISEASE (2017)
Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated Pathogen
Lucia Grana-Miraglia et al.
FRONTIERS IN MICROBIOLOGY (2017)
Horizontally Acquired Genes Are Often Shared between Closely Related Bacterial Species
Evgeni Bolotin et al.
FRONTIERS IN MICROBIOLOGY (2017)
Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors
Mylene Ruh et al.
BMC GENOMICS (2017)
Complete Genome Sequences of Three Xanthomonas citri Strains from Texas
Alejandra Munoz Bodnar et al.
GENOME ANNOUNCEMENTS (2017)
The effect of genetic structure on molecular dating and tests for temporal signal
Gemma G. R. Murray et al.
METHODS IN ECOLOGY AND EVOLUTION (2016)
Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas
Marie-Agnes Jacques et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 54 (2016)
Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security
Bruce A. McDonald et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)
Type II Toxin-Antitoxin Distribution and Adaptive Aspects on Xanthomonas Genomes: Focus on Xanthomonas citri
Paula M. M. Martins et al.
FRONTIERS IN MICROBIOLOGY (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges
Jonathan L. Gordon et al.
BMC GENOMICS (2015)
Complete sequence and detailed analysis of the first indigenous plasmid from Xanthomonas oryzae pv. oryzicola
Xiang-Na Niu et al.
BMC MICROBIOLOGY (2015)
Bridgehead invasion of a monomorphic plant pathogenic bacterium: Xanthomonas citri pv.citri, an emerging citrus pathogen in Mali and Burkina Faso
A. Leduc et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data
Sebastian Duchene et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A multidrug resistance plasmid contains the molecular switch for type VI secretion in Acinetobacter baumannii
Brent S. Weber et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Rates of Lateral Gene Transfer in Prokaryotes: High but Why?
Michiel Vos et al.
TRENDS IN MICROBIOLOGY (2015)
Phytopathogen emergence in the genomics era
Elisha Thynne et al.
TRENDS IN PLANT SCIENCE (2015)
A TALE of Transposition: Tn3-Like Transposons Play a Major Role in the Spread of Pathogenicity Determinants of Xanthomonas citri and Other Xanthomonads
Rafael Marini Ferreira et al.
MBIO (2015)
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
Xavier Didelot et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin et al.
VIRUS EVOLUTION (2015)
Harnessing Population Genomics to Understand How Bacterial Pathogens Emerge, Adapt to Crop Hosts, and Disseminate
Boris A. Vinatzer et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 52 (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages
Reuben W. Nowell et al.
GENOME BIOLOGY AND EVOLUTION (2014)
New Applications for Phage Integrases
Paul C. M. Fogg et al.
JOURNAL OF MOLECULAR BIOLOGY (2014)
A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage
Olivier Pruvost et al.
PLOS ONE (2014)
Diversification of bacterial genome content through distinct mechanisms over different timescales
Nicholas J. Croucher et al.
NATURE COMMUNICATIONS (2014)
Gene Frequency Distributions Reject a Neutral Model of Genome Evolution
Alexander E. Lobkovsky et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Evidence for Acquisition of Copper Resistance Genes from Different Sources in Citrus-Associated Xanthomonads
Franklin Behlau et al.
PHYTOPATHOLOGY (2013)
Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona
Zhemin Zhou et al.
PLOS GENETICS (2013)
The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
Kentaro Yoshida et al.
ELIFE (2013)
Pathogen-host-environment interplay and disease emergence
Anneke Engering et al.
EMERGING MICROBES & INFECTIONS (2013)
A neutral theory of genome evolution and the frequency distribution of genes
Bart Haegeman et al.
BMC GENOMICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
TAL effector RVD specificities and efficiencies
Jana Streubel et al.
NATURE BIOTECHNOLOGY (2012)
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species
Derrick E. Fouts et al.
NUCLEIC ACIDS RESEARCH (2012)
Mode of Action of Streptomycin Resistance in the Citrus Canker Pathogen (Xanthomonas smithii subsp citri) in Jeju Island
Jae-Wook Hyun et al.
PLANT PATHOLOGY JOURNAL (2012)
Insights from genomic comparisons of genetically monomorphic bacterial pathogens
Mark Achtman
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Biological invasions in agricultural settings: Insights from evolutionary biology and population genetics
Thomas Guillemaud et al.
COMPTES RENDUS BIOLOGIES (2011)
Pathogenomics of Xanthomonas: understanding bacterium-plant interactions
Robert P. Ryan et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Reconstructing routes of invasion using genetic data: why, how and so what?
Arnaud Estoup et al.
MOLECULAR ECOLOGY (2010)
Network analyses structure genetic diversity in independent genetic worlds
Sebastien Halary et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Recent Evolution of Bacterial Pathogens: Tne Gall-Forming Pantoea agglomerans Case
Isaac Barash et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY (2009)
Trade, transport and trouble: managing invasive species pathways in an era of globalization
Philip E. Hulme
JOURNAL OF APPLIED ECOLOGY (2009)
Conjugative plasmids: vessels of the communal gene pool
Anders Norman et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon et al.
PLOS GENETICS (2009)
Evolutionary patterns in prokaryotic genomes
Eduardo P. C. Rocha
CURRENT OPINION IN MICROBIOLOGY (2008)
Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism
Wanessa C. Lima et al.
FEMS MICROBIOLOGY LETTERS (2008)
A pthA homolog from Xanthomonas axonopodis pv. citri responsible for host-specific suppression of virulence
Hiroshi Shiotani et al.
JOURNAL OF BACTERIOLOGY (2007)
In planta horizontal transfer of a major pathogenicity effector gene
B. El Yacoubi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
The role of laterally transferred genes in adaptive evolution
Pradeep Reddy Marri et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Gene gain and gene loss in Streptococcus:: Is it driven by habitat?
Pradeep Reddy Marri et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
The fate of laterally transferred genes: Life in the fast lane to adaptation or death
WL Hao et al.
GENOME RESEARCH (2006)
Evolutionary origins of genomic repertoires in bacteria
E Lerat et al.
PLOS BIOLOGY (2005)
Horizontal gene transfer, genome innovation and evolution
JP Gogarten et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers
PK Anderson et al.
TRENDS IN ECOLOGY & EVOLUTION (2004)
Xanthomonas axonopodis pv. citri: factors affecting successful eradication of citrus canker
JH Graham et al.
MOLECULAR PLANT PATHOLOGY (2004)
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
ACR da Silva et al.
NATURE (2002)
Share Paper
