Related references
Note: Only part of the references are listed.The secretome of Pichia pastoris in fed-batch cultivations is largely independent of the carbon source but changes quantitatively over cultivation time
Jonas Burgard et al.
MICROBIAL BIOTECHNOLOGY (2020)
Pichia pastoris: A highly successful expression system for optimal synthesis of heterologous proteins
Mohsen Karbalaei et al.
JOURNAL OF CELLULAR PHYSIOLOGY (2020)
Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion
Jahir M. Gutierrez et al.
NATURE COMMUNICATIONS (2020)
Multiplex secretome engineering enhances recombinant protein production and purity
Stefan Kol et al.
NATURE COMMUNICATIONS (2020)
SignalP 5.0 improves signal peptide predictions using deep neural networks
Jose Juan Almagro Armenteros et al.
NATURE BIOTECHNOLOGY (2019)
CRISPR-mediated genome editing in non-conventional yeasts for biotechnological applications
Peng Cai et al.
MICROBIAL CELL FACTORIES (2019)
A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution
Fuad Mohammad et al.
ELIFE (2019)
Extensive post-transcriptional buffering of gene expression in the response to severe oxidative stress in baker's yeast
William R. Blevins et al.
SCIENTIFIC REPORTS (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
Current advances in engineering tools for Pichia pastoris
Jasmin E. Fischer et al.
CURRENT OPINION IN BIOTECHNOLOGY (2019)
Structure of the post-translational protein translocation machinery of the ER membrane
Xudong Wu et al.
NATURE (2019)
Structure of the posttranslational Sec protein-translocation channel complex from yeast
Samuel Itskanov et al.
SCIENCE (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Debottlenecking protein secretion and reducing protein aggregation in the cellular host
Yizhou Zhou et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
The yeast stands alone: the future of protein biologic production
Kerry R. Love et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
Modeling the multi-scale mechanisms of macromolecular resource allocation
Laurence Yang et al.
CURRENT OPINION IN MICROBIOLOGY (2018)
The impact of ERAD on recombinant protein secretion in Pichia pastoris (syn Komagataella spp.)
Richard J. Zahrl et al.
MICROBIOLOGY-SGM (2018)
Defining the physiological role of SRP in protein-targeting efficiency and specificity
Elizabeth A. Costa et al.
SCIENCE (2018)
Hsp70-associated chaperones have a critical role in buffering protein production costs
Zoltan Farkas et al.
ELIFE (2018)
Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum
Xing-Xing Shen et al.
CELL (2018)
On-demand manufacturing of clinical-quality biopharmaceuticals
Laura E. Crowell et al.
NATURE BIOTECHNOLOGY (2018)
Production of Protein-Complex Components Is Stoichiometric and Lacks General Feedback Regulation in Eukaryotes
James C. Taggart et al.
CELL SYSTEMS (2018)
Recent advances of molecular toolbox construction expand Pichia pastoris in synthetic biology applications
Zhen Kang et al.
WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2017)
Targeting and translocation of proteins to the endoplasmic reticulum at a glance
Naama Aviram et al.
JOURNAL OF CELL SCIENCE (2017)
Transcriptome-wide measurement of translation by ribosome profiling
Nicholas J. McGlincy et al.
METHODS (2017)
Ribosome profiling-guided depletion of an mRNA increases cell growth rate and protein secretion
Thomas Beuchert Kallehauge et al.
SCIENTIFIC REPORTS (2017)
Principles of cellular resource allocation revealed by condition-dependent proteome profiling
Eyal Metzl-Raz et al.
ELIFE (2017)
Exploring the potential of Saccharomyces cerevisiae for biopharmaceutical protein production
Guokun Wang et al.
CURRENT OPINION IN BIOTECHNOLOGY (2017)
Systems biotechnology for protein production in Pichia pastoris
Richard J. Zahrl et al.
FEMS YEAST RESEARCH (2017)
DeepLoc: prediction of protein subcellular localization using deep learning
Jose Juan Almagro Armenteros et al.
BIOINFORMATICS (2017)
Genome-scale modeling of yeast: chronology, applications and critical perspectives
Helder Lopes et al.
FEMS YEAST RESEARCH (2017)
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2016)
Comparative genomics and transcriptomics of Pichia pastoris
Kerry R. Love et al.
BMC GENOMICS (2016)
Ribosome Footprint Profiling of Translation throughout the Genome
Nicholas T. Ingolia
CELL (2016)
Cotranslational signal-independent SRP preloading during membrane targeting
Justin W. Chartron et al.
NATURE (2016)
In vivo aspects of protein folding and quality control
David Balchin et al.
SCIENCE (2016)
Genome-wide assessment of differential translations with ribosome profiling data
Zhengtao Xiao et al.
NATURE COMMUNICATIONS (2016)
Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function
Minoska Valli et al.
FEMS YEAST RESEARCH (2016)
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts
Alison C. Testa et al.
BMC GENOMICS (2015)
Editorial: Yeast synthetic biology: new tools to unlock cellular function
Hal S. Alper et al.
FEMS YEAST RESEARCH (2015)
Signal peptide optimization tool for the secretion of recombinant protein from Saccharomyces cerevisiae
Akihiro Mori et al.
JOURNAL OF BIOSCIENCE AND BIOENGINEERING (2015)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
Konstantinos D. Tsirigos et al.
NUCLEIC ACIDS RESEARCH (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Protein expression in Pichia pastoris: recent achievements and perspectives for heterologous protein production
Mudassar Ahmad et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
Gene-Wei Li et al.
CELL (2014)
The Back and Forth of Cargo Exit from the Endoplasmic Reticulum
Yosef Geva et al.
CURRENT BIOLOGY (2014)
Ribosome profiling: new views of translation, from single codons to genome scale APPLICATIONS OF NEXT-GENERATION SEQUENCING - INNOVATION
Nicholas T. Ingolia
NATURE REVIEWS GENETICS (2014)
Translation inhibitors cause abnormalities in ribosome profiling experiments
Maxim V. Gerashchenko et al.
NUCLEIC ACIDS RESEARCH (2014)
Visual account of protein investment in cellular functions
Wolfram Liebermeister et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling
Calvin H. Jan et al.
SCIENCE (2014)
Genome-wide Translational Changes Induced by the Prion [PSI+]
Agnes Baudin-Baillieu et al.
CELL REPORTS (2014)
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
Stacia R. Engel et al.
G3-GENES GENOMES GENETICS (2014)
Measurement of average decoding rates of the 61 sense codons in vivo.
Justin Gardin et al.
ELIFE (2014)
Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments
Liana F. Lareau et al.
ELIFE (2014)
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
Marie-Agnes Dillies et al.
BRIEFINGS IN BIOINFORMATICS (2013)
A Network of Cytosolic Factors Targets SRP-Independent Proteins to the Endoplasmic Reticulum
Tslil Ast et al.
CELL (2013)
Principles of Cotranslational Ubiquitination and Quality Control at the Ribosome
Stefanie Duttler et al.
MOLECULAR CELL (2013)
Genome-Scale Modeling of the Protein Secretory Machinery in Yeast
Amir Feizi et al.
PLOS ONE (2013)
Software for Computing and Annotating Genomic Ranges
Michael Lawrence et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
The secretory pathway: exploring yeast diversity
Marizela Delic et al.
FEMS MICROBIOLOGY REVIEWS (2013)
Systematic Single-Cell Analysis of Pichia pastoris Reveals Secretory Capacity Limits Productivity
Kerry Routenberg Love et al.
PLOS ONE (2012)
Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
Gunter P. Wagner et al.
THEORY IN BIOSCIENCES (2012)
Membrane Protein Insertion at the Endoplasmic Reticulum
Sichen Shao et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 27 (2011)
Consequences of the Overexpression of a Eukaryotic Membrane Protein, the Human KDEL Receptor, in Escherichia coli
Mirjam M. Klepsch et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Defining the Specificity of Cotranslationally Acting Chaperones by Systematic Analysis of mRNAs Associated with Ribosome-Nascent Chain Complexes
Marta del Alamo et al.
PLOS BIOLOGY (2011)
An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation
Tamir Tuller et al.
CELL (2010)
Mammalian microRNAs predominantly act to decrease target mRNA levels
Huili Guo et al.
NATURE (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Production of monoclonal antibodies by glycoengineered Pichia pastoris
Thomas I. Potgieter et al.
JOURNAL OF BIOTECHNOLOGY (2009)
Biotechnological strains of Komagataella (Pichia) pastoris are Komagataella phaffii as determined from multigene sequence analysis
Cletus Paul Kurtzman
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY (2009)
Genome sequence of the recombinant protein production host Pichia pastoris
Kristof De Schutter et al.
NATURE BIOTECHNOLOGY (2009)
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
Nicholas T. Ingolia et al.
SCIENCE (2009)
PredGPI: a GPI-anchor predictor
Andrea Pierleoni et al.
BMC BIOINFORMATICS (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
Yeast genome evolution - the origin of the species
Devin R. Scannell et al.
YEAST (2007)
Translation elongation factor 1-α gene from Pichia pastoris:: molecular cloning, sequence, and use of its promoter
Jungoh Ahn et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)
Description of Komagataella phaffii sp nov and the transfer of Pichia pseudopastoris to the methylotrophic yeast genus Komagataella
CP Kurtzman
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)
Sorting GPI-anchored proteins
S Mayor et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)
TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
BIOINFORMATICS (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
Large-scale identification of secreted and membrane-associated gene products using DNA microarrays
M Diehn et al.
NATURE GENETICS (2000)
Share Paper
