4.5 Article

MEDT study of the 1,3-DC reaction of diazomethane with Psilostachyin and investigation about the interactions of some pyrazoline derivatives with protease (Mpro) of nCoV-2

Journal

JOURNAL OF MOLECULAR GRAPHICS & MODELLING
Volume 102, Issue -, Pages -

Publisher

ELSEVIER SCIENCE INC
DOI: 10.1016/j.jmgm.2020.107763

Keywords

DZM; Psilostachyin; IGM; ELF; NCI; M-pro; Docking; COVID-19

Funding

  1. MENFPESRS-DESRS
  2. UCD

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In this study, MEDT theory was utilized to investigate the reaction mechanism between DZM and PSH, revealing that the addition channel at C5 is the preferred one. Various analysis methods were employed to reveal the mechanism and stereo-selectivity of the reaction.
The molecular electronic density theory (MEDT) was invested to elucidate the chemo-, regioand stereo selectivity of the 1,3-dipolar cycloaddition between Diazomethane (DZM) and Psilostachyin (PSH). The DFT method at B3LYP/6-31 thorn G (d,p) level of theory was used. Reactivity indices, transition structures theory, IGM and ELF analysis were employed to reveal the mechanism of the reaction. The addition of DZM to PSH takes place through a one-step mechanism and an asynchronous transition states. Eight possible addition channels of reaction were investigated (addition of C (sp2) to Diazomethane at C4, C5, C6 or C7). The addition of C (sp2) at C5 leading to P1 product is the preferred channel. The addition of ether does not affect the chemo-, regioand stereo-selectivity of the reaction. Analysis of transfer of charges along the IRC path associated with the P1 product shows a polar character for the studied reaction. We have also used the noncovalent interaction (NCI) which is very helpful to reveal the most favored addition channel of the reaction, by analyzing the weak interactions in different TSs. Finally, we investigate about the potential of inhibition of some pyrazoline compounds against COVID-19-Mpro by performing a molecular docking calculations. (c) 2020 Elsevier Inc. All rights reserved.

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