4.6 Review

Artificial intelligence and algorithmic computational pathology: an introduction with renal allograft examples

Related references

Note: Only part of the references are listed.
Review Pathology

Digital pathology and artificial intelligence will be key to supporting clinical and academic cellular pathology through COVID-19 and future crises: the PathLAKE consortium perspective

Lisa Browning et al.

Summary: The measures to control COVID-19 outbreak will likely continue until a suitable vaccine or treatment is found, impacting clinical services and research, with pathologists working remotely and changes to protocols and studies. Digital pathology and artificial intelligence may play a key role in safeguarding clinical services and pathology-based research in the current and future climate.

JOURNAL OF CLINICAL PATHOLOGY (2021)

Article Urology & Nephrology

Development and evaluation of deep learning-based segmentation of histologic structures in the kidney cortex with multiple histologic stains

Catherine P. Jayapandian et al.

Summary: The application of deep learning for automated segmentation of histologic structures from kidney biopsies and nephrectomies showed that Periodic Acid Schiff-stained whole slide images yielded the best concordance between pathologists and deep learning segmentation. Silver stained whole slide images yielded the worst deep learning performance. This study represents the largest adaptation of deep learning for the segmentation of kidney histologic structures across multiple stains and pathology laboratories.

KIDNEY INTERNATIONAL (2021)

Editorial Material Urology & Nephrology

Artificial intelligence in nephropathology

Peter Boor

NATURE REVIEWS NEPHROLOGY (2020)

Article Surgery

Banff Digital Pathology Working Group: Going digital in transplant pathology

Alton B. Farris et al.

AMERICAN JOURNAL OF TRANSPLANTATION (2020)

Review Urology & Nephrology

Artificial intelligence driven next-generation renal histomorphometry

Briana A. Santo et al.

CURRENT OPINION IN NEPHROLOGY AND HYPERTENSION (2020)

Review Urology & Nephrology

Artificial intelligence and machine learning in nephropathology

Jan U. Becker et al.

KIDNEY INTERNATIONAL (2020)

Review Pathology

Digital pathology in the time of corona

Nikolas Stathonikos et al.

JOURNAL OF CLINICAL PATHOLOGY (2020)

Review Urology & Nephrology

Digital pathology and computational image analysis in nephropathology

Laura Barisoni et al.

NATURE REVIEWS NEPHROLOGY (2020)

Article Medical Laboratory Technology

A Practical Guide to Whole Slide Imaging A White Paper From the Digital Pathology Association

Mark D. Zarella et al.

ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2019)

Article Biochemical Research Methods

Structured crowdsourcing enables convolutional segmentation of histology images

Mohamed Amgad et al.

BIOINFORMATICS (2019)

Review Immunology

Enhancing the Value of Histopathological Assessment of Allograft Biopsy Monitoring

Michelle A. Wood-Trageser et al.

TRANSPLANTATION (2019)

Article Oncology

Digital pathology and artificial intelligence

Muhammad Khalid Khan Niazi et al.

LANCET ONCOLOGY (2019)

Article Medical Laboratory Technology

Implementation of Digital Pathology Offers Clinical and Operational Increase in Efficiency and Cost Savings

Matthew G. Hanna et al.

ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2019)

Article Urology & Nephrology

Deep Learning-Based Histopathologic Assessment of Kidney Tissue

Meyke Hermsen et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2019)

Article Urology & Nephrology

Computational Segmentation and Classification of Diabetic Glomerulosclerosis

Brandon Ginley et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2019)

Review Radiology, Nuclear Medicine & Medical Imaging

Technical and clinical overview of deep learning in radiology

Daiju Ueda et al.

JAPANESE JOURNAL OF RADIOLOGY (2019)

Article Urology & Nephrology

Segmentation of Glomeruli Within Trichrome Images Using Deep Learning

Shruti Korman et al.

KIDNEY INTERNATIONAL REPORTS (2019)

Article Computer Science, Artificial Intelligence

An integrated iterative annotation technique for easing neural network training in medical image analysis

Brendon Lutnick et al.

NATURE MACHINE INTELLIGENCE (2019)

Review Medicine, General & Internal

Translational AI and Deep Learning in Diagnostic Pathology

Ahmed Serag et al.

FRONTIERS IN MEDICINE (2019)

Review Medicine, General & Internal

Deep Learning for Whole Slide Image Analysis: An Overview

Neofytos Dimitriou et al.

FRONTIERS IN MEDICINE (2019)

Article Computer Science, Interdisciplinary Applications

Deep Learning Global Glomerulosclerosis in Transplant Kidney Frozen Sections

Jon N. Marsh et al.

IEEE TRANSACTIONS ON MEDICAL IMAGING (2018)

Article Urology & Nephrology

Region-Based Convolutional Neural Nets for Localization of Glomeruli in Trichrome-Stained Whole Kidney Sections

John D. Bukowy et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2018)

Article Multidisciplinary Sciences

Predicting cancer outcomes from histology and genomics using convolutional networks

Pooya Mobadersany et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Review Immunology

A 2018 Reference Guide to the Banff Classification of Renal Allograft Pathology

Candice Roufosse et al.

TRANSPLANTATION (2018)

Article Urology & Nephrology

Association of Pathological Fibrosis With Renal Survival Using Deep Neural Networks

Vijaya B. Kolachalama et al.

KIDNEY INTERNATIONAL REPORTS (2018)

Article Imaging Science & Photographic Technology

Glomerulus Classification and Detection Based on Convolutional Neural Networks

Jaime Gallego et al.

JOURNAL OF IMAGING (2018)

Article Medicine, General & Internal

Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer

Babak Ehteshami Bejnordi et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2017)

Article Multidisciplinary Sciences

Interactive phenotyping of large-scale histology imaging data with HistomicsML

Michael Nalisnik et al.

SCIENTIFIC REPORTS (2017)

Article Medical Laboratory Technology

Whole Slide Imaging for Analytical Anatomic Pathology and Telepathology Practical Applications Today, Promises, and Perils

Alton Brad Farris et al.

ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2017)

Article Urology & Nephrology

Renal Graft Fibrosis and Inflammation Quantification by an Automated Fourier-Transform Infrared Imaging Technique

Vincent Vuiblet et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2016)

Article Urology & Nephrology

Three-Dimensional Morphology by Multiphoton Microscopy with Clearing in a Model of Cisplatin-Induced CKD

Richard Torres et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2016)

Article Medical Laboratory Technology

Computational Pathology A Path Ahead

David N. Louis et al.

ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2016)

Editorial Material Medicine, General & Internal

Predicting the Future - Big Data, Machine Learning, and Clinical Medicine

Ziad Obermeyer et al.

NEW ENGLAND JOURNAL OF MEDICINE (2016)

Article Biochemical Research Methods

Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image

Tsuyoshi Kato et al.

BMC BIOINFORMATICS (2015)

Article Cardiac & Cardiovascular Systems

Machine Learning in Medicine

Rahul C. Deo

CIRCULATION (2015)

Article Computer Science, Information Systems

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

David A. Gutman et al.

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION (2013)

Article Medicine, General & Internal

Integrating pathology and radiology disciplines: an emerging opportunity?

James Sorace et al.

BMC MEDICINE (2012)

Article Developmental Biology

A computational image analysis glossary for biologists

Adrienne H. K. Roeder et al.

DEVELOPMENT (2012)

Article Urology & Nephrology

Morphometric and Visual Evaluation of Fibrosis in Renal Biopsies

Alton B. Farris et al.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2011)

Review Urology & Nephrology

Protocol biopsies in renal transplantation: Prognostic value of structural monitoring

D. Seron et al.

KIDNEY INTERNATIONAL (2007)

Article Transplantation

Morphometry of interstitial fibrosis

E De Heer et al.

NEPHROLOGY DIALYSIS TRANSPLANTATION (2000)