Related references
Note: Only part of the references are listed.Insights Obtained by Culturing Saccharibacteria With Their Bacterial Hosts
B. Bor et al.
JOURNAL OF DENTAL RESEARCH (2020)
How Does Epstein-Barr Virus Contribute to Chronic Periodontitis?
Kenichi Imai et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
Jeffrey S. McLean et al.
CELL REPORTS (2020)
Visualizing 'omic feature rankings and log-ratios using Qurro
Marcus W. Fedarko et al.
NAR GENOMICS AND BIOINFORMATICS (2020)
A new genomic blueprint of the human gut microbiota
Alexandre Almeida et al.
NATURE (2019)
New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach et al.
NATURE (2019)
A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Cameron Martino et al.
MSYSTEMS (2019)
Toll‐like receptor 2 and toll‐like receptor 4 responses regulate neutrophil infiltration into the junctional epithelium and significantly contribute to the composition of the oral microbiota
Ana M. Chang et al.
JOURNAL OF PERIODONTOLOGY (2019)
Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease
Gajender Aleti et al.
MBIO (2019)
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen et al.
NATURE BIOTECHNOLOGY (2019)
Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories
Alon Shaiber et al.
MBIO (2019)
Establishing microbial composition measurement standards with reference frames
James T. Morton et al.
NATURE COMMUNICATIONS (2019)
The Predominant Oral Microbiota Is Acquired Early in an Organized Pattern
Rosalyn M. Sulyanto et al.
SCIENTIFIC REPORTS (2019)
Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis
Anna Lundmark et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2019)
Targeted isolation and cultivation of uncultivated bacteria by reverse genomics
Karissa L. Cross et al.
NATURE BIOTECHNOLOGY (2019)
Learning representations of microbe-metabolite interactions
James T. Morton et al.
NATURE METHODS (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
Comparison of the salivary and dentinal microbiome of children with severe-early childhood caries to the salivary microbiome of caries-free children
Eimear Hurley et al.
BMC ORAL HEALTH (2019)
Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children
Nezar Noor Al-Hebshi et al.
JOURNAL OF ORAL MICROBIOLOGY (2019)
Arginine Metabolism in Supragingival Oral Biofilms as a Potential Predictor of Caries Risk
M. M. Nascimento et al.
JDR CLINICAL & TRANSLATIONAL RESEARCH (2019)
Beyond Streptococcus mutans: clinical implications of the evolving dental caries aetiological paradigms and its associated microbiome
N. Philip et al.
BRITISH DENTAL JOURNAL (2018)
Best practices for analysing microbiomes
Rob Knight et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
Tom O. Delmont et al.
PEERJ (2018)
Are the mutans streptococci still considered relevant to understanding the microbial etiology of dental caries?
Jeffrey A. Banas et al.
BMC ORAL HEALTH (2018)
MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis
Gherman V. Uritskiy et al.
MICROBIOME (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease
Josh L. Espinoza et al.
MBIO (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
Cytokine Thresholds in Gingival Crevicular Fluid with Potential Diagnosis of Chronic Periodontitis Differentiating by Smoking Status
N. Arias-Bujanda et al.
SCIENTIFIC REPORTS (2018)
Evaluating the Information Content of Shallow Shotgun Metagenomics
Benjamin Hillmann et al.
MSYSTEMS (2018)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
The innate host response in caries and periodontitis
Joerg Meyle et al.
JOURNAL OF CLINICAL PERIODONTOLOGY (2017)
Microbiome Associated with Severe Caries in Canadian First Nations Children
M. Agnello et al.
JOURNAL OF DENTAL RESEARCH (2017)
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers et al.
NATURE BIOTECHNOLOGY (2017)
Ecology of the Oral Microbiome: Beyond Bacteria
Jonathon L. Baker et al.
TRENDS IN MICROBIOLOGY (2017)
Relationship between Gingival Crevicular Fluid Microbiota and Cytokine Profile in Periodontal Host Homeostasis
Jianye Zhou et al.
FRONTIERS IN MICROBIOLOGY (2017)
Microbiome Datasets Are Compositional: And This Is Not Optional
Gregory B. Gloor et al.
FRONTIERS IN MICROBIOLOGY (2017)
Dental caries
Nigel B. Pitts et al.
NATURE REVIEWS DISEASE PRIMERS (2017)
Balance Trees Reveal Microbial Niche Differentiation
James T. Morton et al.
MSYSTEMS (2017)
Host Genetic Control of the Oral Microbiome in Health and Disease
Andres Gomez et al.
CELL HOST & MICROBE (2017)
Interbacterial Adhesion Networks within Early Oral Biofilms of Single Human Hosts
Robert J. Palmer et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
Dental caries - not just holes in teeth! A perspective
W. H. Bowen
MOLECULAR ORAL MICROBIOLOGY (2016)
Measurement of bacterial replication rates in microbial communities
Christopher T. Brown et al.
NATURE BIOTECHNOLOGY (2016)
Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
Juan Jovel et al.
FRONTIERS IN MICROBIOLOGY (2016)
Salivary Microbiome Diversity in Caries-Free and Caries-Affected Children
Shan Jiang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
Reconstructing 16S rRNA genes in metagenomic data
Cheng Yuan et al.
BIOINFORMATICS (2015)
Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota
Fei Teng et al.
CELL HOST & MICROBE (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
Anvi'o: an advanced analysis and visualization platformfor 'omics data
A. Murat Eren et al.
PEERJ (2015)
Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
Xuesong He et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Toward better understanding of artifacts in variant calling from high-coverage samples
Heng Li
BIOINFORMATICS (2014)
The oral microbiome and the immunobiology of periodontal disease and caries
Massimo Costalonga et al.
IMMUNOLOGY LETTERS (2014)
Pyrosequencing Analysis of Oral Microbiota Shifting in Various Caries States in Childhood
Wen Jiang et al.
MICROBIAL ECOLOGY (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
A Tissue-Dependent Hypothesis of Dental Caries
A. Simon-Soro et al.
CARIES RESEARCH (2013)
Pyrosequencing Analysis of Oral Microbiota in Children with Severe Early Childhood Dental Caries
Wen Jiang et al.
CURRENT MICROBIOLOGY (2013)
EMPeror: a tool for visualizing high-throughput microbial community data
Yoshiki Vázquez-Baeza et al.
GigaScience (2013)
The Branched-Chain Amino Acid Aminotransferase Encoded by ilvE Is Involved in Acid Tolerance in Streptococcus mutans
Brendaliz Santiago et al.
JOURNAL OF BACTERIOLOGY (2012)
PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets
Ameet J. Pinto et al.
PLOS ONE (2012)
Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Erin L. Gross et al.
PLOS ONE (2012)
Progress toward understanding the contribution of alkali generation in dental biofilms to inhibition of dental caries
Ya-Ling Liu et al.
INTERNATIONAL JOURNAL OF ORAL SCIENCE (2012)
Caries induced cytokine network in the odontoblast layer of human teeth
Orapin V. Horst et al.
BMC IMMUNOLOGY (2011)
Microbiota of Severe Early Childhood Caries before and after Therapy
A. C. R. Tanner et al.
JOURNAL OF DENTAL RESEARCH (2011)
Bacterial 16S Sequence Analysis of Severe Caries in Young Permanent Teeth
Erin L. Gross et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Polymerase chain reaction primers miss half of rRNA microbial diversity
SunHee Hong et al.
ISME JOURNAL (2009)
Caries-related bacteria and cytokines induce CXCL10 in dental pulp
T. Adachi et al.
JOURNAL OF DENTAL RESEARCH (2007)
Irreversible but not reversible pulpitis is associated with up-regulation of tumour necrosis factor-alpha gene expression in human pulp
A. B. Kokkas et al.
INTERNATIONAL ENDODONTIC JOURNAL (2007)
Epidermal growth factor released in human dental pulp following orthodontic force
Kathryn Derringer et al.
EUROPEAN JOURNAL OF ORTHODONTICS (2007)
S100 and cytokine expression in caries
JL McLachlan et al.
INFECTION AND IMMUNITY (2004)
Carious dentine provides a habitat for a complex array of novel Prevotella-like bacteria
MA Nadkarni et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Vascular endothelial growth factor (VEGF) expression in healthy and inflamed human dental pulps
L Artese et al.
JOURNAL OF ENDODONTICS (2002)
Cytokine induction by Streptococcus mutans and pulpal pathogenesis
CL Hahn et al.
INFECTION AND IMMUNITY (2000)
Transforming growth factor-β isoform expression in mature human healthy and carious molar teeth
AJ Sloan et al.
HISTOCHEMICAL JOURNAL (2000)