4.2 Article

Experimental and theoretical rationalization for the base pairing abilities of inosine, guanosine, adenosine, and their corresponding 8-oxo-7,8-dihydropurine, and 8-bromopurine analogues within A-form duplexes of RNA

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

7,8-Dihydro-8-oxoguanosine Lesions Inhibit the Theophylline Aptamer or Change Its Selectivity

Courtney Kiggins et al.

CHEMBIOCHEM (2020)

Review Biochemistry & Molecular Biology

Recent Advances: Molecular Mechanism of RNA Oxidation and Its Role in Various Diseases

Zhe Li et al.

FRONTIERS IN MOLECULAR BIOSCIENCES (2020)

Article Multidisciplinary Sciences

Position-specific oxidation of miR-1 encodes cardiac hypertrophy

Heeyoung Seok et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

Inosine induces context-dependent recoding and translational stalling

Konstantin Licht et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

Oxidation and alkylation stresses activate ribosome-quality control

Liewei L. Yan et al.

NATURE COMMUNICATIONS (2019)

Article Biochemistry & Molecular Biology

Oxidative stress damages rRNA inside the ribosome and differentially affects the catalytic center

Jessica Willi et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Transcriptional mutagenesis mediated by 8-oxoG induces translational errors in mammalian cells

Da-Peng Dai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Genetics & Heredity

Role of Inosine-Uracil Base Pairs in the Canonical RNA Duplexes

Nad'a Spackova et al.

GENES (2018)

Article Biochemistry & Molecular Biology

Stability of RNA duplexes containing inosine•cytosine pairs

Daniel J. Wright et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biochemistry & Molecular Biology

Consequences of RNA oxidation on protein synthesis rate and fidelity: implications for the pathophysiology of neuropsychiatric disorders

Akihiko Nunomura et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2017)

Article Biochemistry & Molecular Biology

The structural diversity of artificial genetic polymers

Irina Anosova et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Chemistry, Multidisciplinary

Site-Specific Isotope-Labeling of Inosine Phosphoramidites and NMR Analysis of an Inosine-Containing RNA Duplex

Andre Dallmann et al.

CHEMISTRY-A EUROPEAN JOURNAL (2016)

Article Psychiatry

Increased DNA and RNA damage by oxidation in patients with bipolar I disorder

A. S. Jacoby et al.

TRANSLATIONAL PSYCHIATRY (2016)

Article Chemistry, Physical

Density Functional Theory and Hydrogen Bonds: Are We There Yet?

A. Daniel Boese

CHEMPHYSCHEM (2015)

Article Biochemistry & Molecular Biology

Oxidative Modification of miR-184 Enables It to Target Bcl-xL and Bcl-w

Jian-Xun Wang et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

Profiling RNA editing in human tissues: towards the inosinome Atlas

Ernesto Picardi et al.

SCIENTIFIC REPORTS (2015)

Article Chemistry, Physical

Advances in molecular quantum chemistry contained in the Q-Chem 4 program package

Yihan Shao et al.

MOLECULAR PHYSICS (2015)

Article Cell Biology

An introduction to recurrent nucleotide interactions in RNA

Blake A. Sweeney et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)

Review Biochemistry & Molecular Biology

Isostericity and tautomerism of base pairs in nucleic acids

Eric Westhof

FEBS LETTERS (2014)

Article Biochemistry & Molecular Biology

Synthesis of the Oligoribonucleotides Incorporating 8-Oxo-Guanosine and Evaluation of their Base Pairing Properties

Yohei Koga et al.

NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS (2013)

Article Cell Biology

DNA Base Damage by Reactive Oxygen Species, Oxidizing Agents, and UV Radiation

Jean Cadet et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2013)

Article Chemistry, Multidisciplinary

Effect of the Damping Function in Dispersion Corrected Density Functional Theory

Stefan Grimme et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)

Article Chemistry, Multidisciplinary

Electron Donor-Acceptor Interactions with Flanking Purines Influence the Efficiency of Thymine Photodimerization

Zhengzheng Pan et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Biochemistry & Molecular Biology

Prevalence of syn nucleobases in the active sites of functional RNAs

Joshua E. Sokoloski et al.

Review Chemistry, Physical

A computational characterization of the hydrogen-bonding and stacking interactions of hypoxanthine

Lesley R. Rutledge et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2007)

Article Biochemistry & Molecular Biology

Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes

NE Watkins et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Chemistry, Multidisciplinary

Understanding nucleic acids using synthetic chemistry

SA Benner

ACCOUNTS OF CHEMICAL RESEARCH (2004)

Article Biochemistry & Molecular Biology

Solution structure of a DNA duplex containing 8-hydroxy-2′-deoxyguanosine opposite deoxyguanosine

V Thiviyanathan et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

The non-Watson-Crick base pairs and their associated isostericity matrices

NB Leontis et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Chemistry, Medicinal

Base pairing properties of 8-oxo-7,8-dihydroadenosine in cDNA synthesis by reverse transcriptases

SK Kim et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2002)