4.7 Article

Agent-based modeling reveals benefits of heterogeneous and stochastic cell populations during cGAS-mediated IFNβ production

Journal

BIOINFORMATICS
Volume 37, Issue 10, Pages 1428-1434

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btaa969

Keywords

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Funding

  1. National Science Foundation [1943777]
  2. University of Pittsburgh
  3. Div Of Chem, Bioeng, Env, & Transp Sys
  4. Directorate For Engineering [1943777] Funding Source: National Science Foundation

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The study revealed that cell heterogeneity can enhance IFN beta responses during infection. Only 20-30% of cells need to respond during infection, beyond which no additional protection against cell death or reduction of viral load is provided.
Motivation: The cGAS pathway is a component of the innate immune system responsible for the detection of pathogenic DNA and upregulation of interferon beta (IFN beta). Experimental evidence shows that IFN beta signaling occurs in highly heterogeneous cells and is stochastic in nature; however, the benefits of these attributes remain unclear. To investigate how stochasticity and heterogeneity affect IFN beta production, an agent-based model is developed to simulate both DNA transfection and viral infection. Results: We show that heterogeneity can enhance IFN beta responses during infection. Furthermore, by varying the degree of IFN beta stochasticity, we find that only a percentage of cells (20-30%) need to respond during infection. Going beyond this range provides no additional protection against cell death or reduction of viral load. Overall, these simulations suggest that heterogeneity and stochasticity are important for moderating immune potency while minimizing cell death during infection.

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