4.8 Article

autodE: Automated Calculation of Reaction Energy Profiles- Application to Organic and Organometallic Reactions

Journal

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
Volume 60, Issue 8, Pages 4266-4274

Publisher

WILEY-V C H VERLAG GMBH
DOI: 10.1002/anie.202011941

Keywords

automation; reaction mechanisms; sampling; transition states

Funding

  1. EPSRC Centre for Doctoral Theory and Modelling in Chemical Sciences [EP/L015722/1]
  2. AWE (Ministry of Defence British Crown Copyright 2020/AWE)
  3. EPSRC Centre for Doctoral Training in Synthesis for Biology and Medicine [EP/L015838/1]
  4. AstraZeneca
  5. Diamond Light Source
  6. Defence Science and Technology Laboratory
  7. Evotec
  8. GlaxoSmithKline
  9. Janssen
  10. Novartis
  11. Pfizer
  12. Syngenta
  13. Takeda
  14. UCB
  15. Vertex
  16. Oxford-Radcliffe Scholarship
  17. EPSRC [EP/P020267/1] Funding Source: UKRI

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autodE is an open-source Python package that can calculate reaction energy profiles for organic and organometallic reactions, locating transition states and minima and compatible with multiple electronic structure packages.
Calculating reaction energy profiles to aid in mechanistic elucidation has long been the domain of the expert computational chemist. Here, we introduce autodE (), an open-source Python package capable of locating transition states (TSs) and minima and delivering a full reaction energy profile from 1D or 2D chemical representations. autodE is broadly applicable to study organic and organometallic reaction classes, including addition, substitution, elimination, migratory insertion, oxidative addition, and reductive elimination; it accounts for conformational sampling of both minima and TSs and is compatible with many electronic structure packages. The general applicability of autodE is demonstrated in complex multi-step reactions, including cobalt- and rhodium-catalyzed hydroformylation and an Ireland-Claisen rearrangement.

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