Scan and Unlock: A Programmable DNA Molecular Automaton for Cell-Selective Activation of Ligand-Based Signaling

Selective modulation of ligand-receptor interaction is essential in targeted therapy. In this study, we design an intelligent scan and unlock DNA automaton (SUDA) system to equip a native protein-ligand with cell-identity recognition and receptor-mediated signaling in a cell-type-specific manner. Using embedded DNA-based chemical reaction networks (CRNs) on the cell surface, SUDA scans and evaluates molecular profiles of cell-surface proteins via Boolean logic circuits. Therefore, it achieves cell-specific signal modulation by quickly unlocking the protein-ligand in proximity to the target cell-surface to activate its cognate receptor. As a proof of concept, we non-genetically engineered hepatic growth factor (HGF) with distinct logic SUDAs to elicit target cell-specific HGF signaling and wound healing behaviors in multiple heterogeneous cell types. Furthermore, the versatility of the SUDA strategy was shown by engineering tumor necrotic factor-alpha (TNF alpha) to induce programmed cell death of target cell subpopulations through cell-specific modulation of TNFR1 signaling.

Automated summary

Selective modulation of ligand-receptor interaction is crucial in targeted therapy. The SUDA system uses embedded DNA-based chemical reaction networks to scan and evaluate molecular profiles of cell-surface proteins, achieving cell-specific signal modulation by quickly unlocking the protein-ligand in proximity to the target cell-surface. The versatility of the SUDA strategy is shown through engineering TNF alpha to induce programmed cell death of target cell subpopulations.