4.6 Article

Towards FAIR protocols and workflows: the OpenPREDICT use case

Related references

Note: Only part of the references are listed.
Article Computer Science, Information Systems

A Generic Workflow for the Data FAIRification Process

Annika Jacobsen et al.

DATA INTELLIGENCE (2020)

Article Computer Science, Information Systems

Goal-oriented requirements engineering: an extended systematic mapping study

Jennifer Horkoff et al.

REQUIREMENTS ENGINEERING (2019)

Article Computer Science, Software Engineering

Checking business process evolution

Ajay Krishna et al.

SCIENCE OF COMPUTER PROGRAMMING (2019)

Article Computer Science, Theory & Methods

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Sarah Cohen-Boulakia et al.

FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE (2017)

Article Mathematical & Computational Biology

Using semantics for representing experimental protocols

Olga Giraldo et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2017)

Proceedings Paper Computer Science, Artificial Intelligence

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments

Rafael S. Goncalves et al.

SEMANTIC WEB - ISWC 2017, PT II (2017)

Article Computer Science, Interdisciplinary Applications

A novel flexible activity refinement approach for improving workflow process flexibility

Yanrong Jiang et al.

COMPUTERS IN INDUSTRY (2016)

Editorial Material Multidisciplinary Sciences

IS THERE A REPRODUCIBILITY CRISIS?

Monya Baker

NATURE (2016)

Article Multidisciplinary Sciences

Comment: The FAIR Guiding Principles for scientific data management and stewardship

Mark D. Wilkinson et al.

SCIENTIFIC DATA (2016)

Article Computer Science, Artificial Intelligence

Using a suite of ontologies for preserving workflow-centric research objects

Khalid Belhajjame et al.

JOURNAL OF WEB SEMANTICS (2015)

Article Multidisciplinary Sciences

Uncovering disease-disease relationships through the incomplete interactome

Joerg Menche et al.

SCIENCE (2015)

Article Computer Science, Artificial Intelligence

Towards ontological foundations for conceptual modeling: The unified foundational ontology (UFO) story

Giancarlo Guizzardi et al.

APPLIED ONTOLOGY (2015)

Article Multidisciplinary Sciences

A network medicine approach to quantify distance between hereditary disease modules on the interactome

Horacio Caniza et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

Genenames.org: the HGNC resources in 2015

Kristian A. Gray et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Mouse model phenotypes provide information about human drug targets

Robert Hoehndorf et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

A phenome-guided drug repositioning through a latent variable model

Halil Bisgin et al.

BMC BIOINFORMATICS (2014)

Article Psychology, Social

Investigating Variation in Replicability A Many Labs'' Replication Project

Richard A. Klein et al.

SOCIAL PSYCHOLOGY (2014)

Article Mathematical & Computational Biology

Computational drug repositioning through heterogeneous network clustering

Chao Wu et al.

BMC SYSTEMS BIOLOGY (2013)

Article Mathematical & Computational Biology

Ontology-Based Querying with Bio2RDF’s Linked Open Data

Alison Callahan et al.

Journal of Biomedical Semantics (2013)

Editorial Material Multidisciplinary Sciences

Raise standards for preclinical cancer research

C. Glenn Begley et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Diagnosing the decline in pharmaceutical R&D efficiency

Jack W. Scannell et al.

NATURE REVIEWS DRUG DISCOVERY (2012)

Article Biochemical Research Methods

Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference

Feixiong Cheng et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

PREDICT: a method for inferring novel drug indications with application to personalized medicine

Assaf Gottlieb et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Letter Biotechnology & Applied Microbiology

Believe it or not: how much can we rely on published data on potential drug targets?

Florian Prinz et al.

NATURE REVIEWS DRUG DISCOVERY (2011)

Article Biochemistry & Molecular Biology

A side effect resource to capture phenotypic effects of drugs

Michael Kuhn et al.

MOLECULAR SYSTEMS BIOLOGY (2010)

Article Computer Science, Artificial Intelligence

Linked Data - The Story So Far

Christian Bizer et al.

INTERNATIONAL JOURNAL ON SEMANTIC WEB AND INFORMATION SYSTEMS (2009)

Article Biochemistry & Molecular Biology

The GOA database in 2009-an integrated Gene Ontology Annotation resource

Daniel Barrell et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

BioPortal: ontologies and integrated data resources at the click of a mouse

Natalya F. Noy et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

DrugBank: a knowledgebase for drugs, drug actions and drug targets

David S. Wishart et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

KEGG for linking genomes to life and the environment

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Medicine, General & Internal

Why most published research findings are false

JPA Ioannidis

PLOS MEDICINE (2005)

Review Medicine, General & Internal

Contradicted and initially stronger effects in highly cited clinical research

JPA Ioannidis

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2005)

Article Biotechnology & Applied Microbiology

Drug repositioning: Identifying and developing new uses for existing drugs

TT Ashburn et al.

NATURE REVIEWS DRUG DISCOVERY (2004)