Related references
Note: Only part of the references are listed.Immunization expands B cells specific to HIV-1 V3 glycan in mice and macaques
Amelia Escolano et al.
NATURE (2019)
The HIV-1 Envelope Glycoprotein C3/V4 Region Defines a Prevalent Neutralization Epitope following Immunization
Lin Lei et al.
CELL REPORTS (2019)
Building and rebuilding N-glycans in protein structure models
Bart van Beusekom et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)
Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization
Rui Kong et al.
CELL (2019)
Conformational Plasticity in the HIV-1 Fusion Peptide Facilitates Recognition by Broadly Neutralizing Antibodies
Meng Yuan et al.
CELL HOST & MICROBE (2019)
Consistent elicitation of cross-clade HIV-neutralizing responses achieved in guinea pigs after fusion peptide priming by repetitive envelope trimer boosting
Cheng Cheng et al.
PLOS ONE (2019)
Vaccination with Glycan-Modified HIV NFL Envelope Trimer-Liposomes Elicits Broadly Neutralizing Antibodies to Multiple Sites of Vulnerability
Viktoriya Dubrovskaya et al.
IMMUNITY (2019)
Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle
Philip J. M. Brouwer et al.
NATURE COMMUNICATIONS (2019)
Vaccine-Induced Protection from Homologous Tier 2 SHIV Challenge in Nonhuman Primates Depends on Serum-Neutralizing Antibody Titers
Matthias G. Pauthner et al.
IMMUNITY (2019)
Clustal Omega for making accurate alignments of many protein sequences
Fabian Sievers et al.
PROTEIN SCIENCE (2018)
MolProbity: More and better reference data for improved all-atom structure validation
Christopher J. Williams et al.
PROTEIN SCIENCE (2018)
Locking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination
Lucas J. Bailey et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1
Kai Xu et al.
NATURE MEDICINE (2018)
Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques
P. J. Klasse et al.
PLOS PATHOGENS (2018)
Two-Component Ferritin Nanoparticles for Multimerization of Diverse Trimeric Antigens
Ivelin S. Georgiev et al.
ACS INFECTIOUS DISEASES (2018)
Structure-Guided Redesign Improves NFL HIV Env Trimer Integrity and Identifies an Inter-Protomer Disulfide Permitting Post-Expression Cleavage
Lifei Yang et al.
FRONTIERS IN IMMUNOLOGY (2018)
VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements
Scott Christley et al.
FRONTIERS IN IMMUNOLOGY (2018)
Electron-Microscopy-Based Epitope Mapping Defines Specificities of Polyclonal Antibodies Elicited during HIV-1 BG505 Envelope Trimer Immunization
Matteo Bianchi et al.
IMMUNITY (2018)
Development of broadly neutralizing antibodies in HIV-1 infected elite neutralizers
Elise Landais et al.
RETROVIROLOGY (2018)
Differential processing of HIV envelope glycans on the virus and soluble recombinant trimer
Liwei Cao et al.
NATURE COMMUNICATIONS (2018)
Site-Specific Glycosylation of Virion-Derived HIV-1 Env Is Mimicked by a Soluble Trimeric Immunogen
Weston B. Struwe et al.
CELL REPORTS (2018)
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Jasenko Zivanov et al.
ELIFE (2018)
An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability
Marit J. van Gils et al.
NATURE MICROBIOLOGY (2017)
A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic β-Hairpin Structure
Jeong Hyun Lee et al.
IMMUNITY (2017)
Particulate Array of Well-Ordered HIV Clade C Env Trimers Elicits Neutralizing Antibodies that Display a Unique V2 Cap Approach
Paola Martinez-Murillo et al.
IMMUNITY (2017)
Elicitation of Robust Tier 2 Neutralizing Antibody Responses in Nonhuman Primates by HIV Envelope Trimer Immunization Using Optimized Approaches
Matthias Pauthner et al.
IMMUNITY (2017)
HIV-1 Cross-Reactive Primary Virus Neutralizing Antibody Response Elicited by Immunization in Nonhuman Primates
Yimeng Wang et al.
JOURNAL OF VIROLOGY (2017)
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Shawn Q. Zheng et al.
NATURE METHODS (2017)
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
Ali Punjani et al.
NATURE METHODS (2017)
Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding
Daniel W. Kulp et al.
NATURE COMMUNICATIONS (2017)
Global site-specific N-glycosylation analysis of HIV envelope glycoprotein
Liwei Cao et al.
NATURE COMMUNICATIONS (2017)
Improving the Immunogenicity of Native-like HIV-1 Envelope Trimers by Hyperstabilization
Alba Torrents de la Pena et al.
CELL REPORTS (2017)
Structure and Diversity of the Rhesus Macaque Immunoglobulin Loci through Multiple De Novo Genome Assemblies
Akshaya Ramesh et al.
FRONTIERS IN IMMUNOLOGY (2017)
Neutralizing antibody affords comparable protection against vaginal and rectal simian/human immunodeficiency virus challenge in macaques
Brian Moldt et al.
AIDS (2016)
Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design
Dennis R. Burton et al.
ANNUAL REVIEW OF IMMUNOLOGY, VOL 34 (2016)
Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice
Amelia Escolano et al.
CELL (2016)
HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies
Jon M. Steichen et al.
IMMUNITY (2016)
Gctf: Real-time CTF determination and correction
Kai Zhang
JOURNAL OF STRUCTURAL BIOLOGY (2016)
High-quality full-length immunoglobulin profiling with unique molecular barcoding
M. A. Turchaninova et al.
NATURE PROTOCOLS (2016)
HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogene
Joseph G. Jardine et al.
SCIENCE (2016)
Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody
Rui Kong et al.
SCIENCE (2016)
Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity
Martin M. Corcoran et al.
NATURE COMMUNICATIONS (2016)
Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies
Laura E. McCoy et al.
CELL REPORTS (2016)
Repertoire comparison of the B-cell receptor-encoding loci in humans and rhesus macaques by next-generation sequencing
Vladimir Vigdorovich et al.
CLINICAL & TRANSLATIONAL IMMUNOLOGY (2016)
Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes
Steven W. de Taeye et al.
CELL (2015)
Immunoglobulin VH gene diversity and somatic hypermutation during SIV infection of rhesus macaques
Kejun Guo et al.
IMMUNOGENETICS (2015)
A Native-Like SOSIP.664 Trimer Based on an HIV-1 Subtype B env Gene
Pavel Pugach et al.
JOURNAL OF VIROLOGY (2015)
EMRinger: side chain directed model and map validation for 3D cryo-electron microscopy
Benjamin A. Barad et al.
NATURE METHODS (2015)
Privateer: software for the conformational validation of carbohydrate structures
Jon Agirre et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Stock-based detection of protein oligomeric states in jsPISA
Eugene Krissinel
NUCLEIC ACIDS RESEARCH (2015)
Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles
Daniel Gadala-Maria et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
HIV-1 neutralizing antibodies induced by native-like envelope trimers
Rogier W. Sanders et al.
SCIENCE (2015)
Privateer: software for the conformational validation of carbohydrate structures
Jon Agirre et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Comprehensive Antigenic Map of a Cleaved Soluble HIV-1 Envelope Trimer
Ronald Derking et al.
PLOS PATHOGENS (2015)
A new rhesus macaque assembly and annotation for next-generation sequencing analyses
Aleksey V. Zimin et al.
BIOLOGY DIRECT (2014)
Structure and immune recognition of trimeric pre-fusion HIV-1 Env
Marie Pancera et al.
NATURE (2014)
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
Marco Biasini et al.
NUCLEIC ACIDS RESEARCH (2014)
Recombinant HIV envelope trimer selects for quaternary-dependent antibodies targeting the trimer apex
Devin Sok et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
IgBLAST: an immunoglobulin variable domain sequence analysis tool
Jian Ye et al.
NUCLEIC ACIDS RESEARCH (2013)
Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer
Jean-Philippe Julien et al.
SCIENCE (2013)
Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer
Dmitry Lyumkis et al.
SCIENCE (2013)
Broadly Neutralizing Antibody PGT121 Allosterically Modulates CD4 Binding via Recognition of the HIV-1 gp120 V3 Base and Multiple Surrounding Glycans
Jean-Philippe Julien et al.
PLOS PATHOGENS (2013)
A Next-Generation Cleaved, Soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, Expresses Multiple Epitopes for Broadly Neutralizing but Not Non-Neutralizing Antibodies
Rogier W. Sanders et al.
PLOS PATHOGENS (2013)
Features and development of Coot
P. Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
Grigore D. Pintilie et al.
JOURNAL OF STRUCTURAL BIOLOGY (2010)
Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta
Frank DiMaio et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Protein structure homology modeling using SWISS-MODEL workspace
Lorenza Bordoli et al.
NATURE PROTOCOLS (2009)
NCBIBLAST: a better web interface
Mark Johnson et al.
NUCLEIC ACIDS RESEARCH (2008)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
K Arnold et al.
BIOINFORMATICS (2006)
Automated molecular microscopy: The new Leginon system
C Suloway et al.
JOURNAL OF STRUCTURAL BIOLOGY (2005)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Share Paper
