Related references
Note: Only part of the references are listed.Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology
Peter D. Karp et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Overexpression of budding yeast protein phosphatase Ppz1 impairs translation
Carlos Calafi et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2020)
Dual control of NAD+ synthesis by purine metabolites in yeast
Benoit Pinson et al.
ELIFE (2019)
Protein Phosphatase Ppz1 Is Not Regulated by a Hal3-Like Protein in Plant Pathogen Ustilago maydis
Chunyi Zhang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
MoMo: discovery of statistically significant post-translational modification motifs
Alice Cheng et al.
BIOINFORMATICS (2019)
Methionine triggers Ppz-mediated dephosphorylation of Art1 to promote cargo-specific endocytosis
Sora Lee et al.
JOURNAL OF CELL BIOLOGY (2019)
FlashPack: Fast and Simple Preparation of Ultrahigh-performance Capillary Columns for LC-MS
Sergey I. Kovalchuk et al.
MOLECULAR & CELLULAR PROTEOMICS (2019)
Characterization of the atypical Ppz/Hal3 phosphatase system from the pathogenic fungus Cryptococcus neoformans
Chunyi Zhang et al.
MOLECULAR MICROBIOLOGY (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast
Lichao Zhang et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2019)
Ser/Thr protein phosphatases in fungi: structure, regulation and function
Joaquin Arino et al.
MICROBIAL CELL (2019)
PTMD: A Database of Human Disease-associated Post-translational Modifications
Haodong Xu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2018)
FPD: A comprehensive phosphorylation database in fungi
Youhuang Bai et al.
FUNGAL BIOLOGY (2017)
Evaluation of Parameters for Confident Phosphorylation Site Localization Using an Orbitrap Fusion Tribrid Mass Spectrometer
Samantha Ferries et al.
JOURNAL OF PROTEOME RESEARCH (2017)
Ubiquitin turnover and endocytic trafficking in yeast are regulated by Ser57 phosphorylation of ubiquitin
Sora Lee et al.
ELIFE (2017)
Aspergillusfumigatus protein phosphatase PpzA is involved in iron assimilation, secondary metabolite production, and virulence
Adriana Oliveira Manfiolli et al.
CELLULAR MICROBIOLOGY (2017)
Repair of Oxidative DNA Damage in Saccharomyces cerevisiae
Jisha Chalissery et al.
DNA REPAIR (2017)
Hexokinase 2 Is an Intracellular Glucose Sensor of Yeast Cells That Maintains the Structure and Activity of Mig1 Protein Repressor Complex
Montserrat Vega et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
TORC1 and TORC2 work together to regulate ribosomal protein S6 phosphorylation in Saccharomyces cerevisiae
Seda Yerlikaya et al.
MOLECULAR BIOLOGY OF THE CELL (2016)
The Yeast Cyclin-Dependent Kinase Routes Carbon Fluxes to Fuel Cell Cycle Progression
Jennifer C. Ewald et al.
MOLECULAR CELL (2016)
The Perseus computational platform for comprehensive analysis of (prote)omics data
Stefka Tyanova et al.
NATURE METHODS (2016)
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
Stefka Tyanova et al.
NATURE PROTOCOLS (2016)
The effector AWR5 from the plant pathogen Ralstonia solanacearum is an inhibitor of the TOR signalling pathway
Crina Popa et al.
SCIENTIFIC REPORTS (2016)
The yeast Aft2 transcription factor determines selenite toxicity by controlling the low affinity phosphate transport system
Maria Perez-Sampietro et al.
SCIENTIFIC REPORTS (2016)
Impact of high pH stress on yeast gene expression: A comprehensive analysis of mRNA turnover during stress responses
David Canadell et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2015)
Hog1 Targets Whi5 and Msa1 Transcription Factors To Downregulate Cyclin Expression upon Stress
Alberto Gonzalez-Novo et al.
MOLECULAR AND CELLULAR BIOLOGY (2015)
Complex stability and dynamic subunit interchange modulates the disparate activities of the yeast moonlighting proteins Hal3 and Vhs3
J. Albert Abrie et al.
SCIENTIFIC REPORTS (2015)
Glucose repression in Saccharomyces cerevisiae
Omur Kayikci et al.
FEMS YEAST RESEARCH (2015)
Coregulated Expression of the Na+/Phosphate Pho89 Transporter and Ena1 Na+-ATPase Allows Their Functional Coupling under High-pH Stress
Albert Serra-Cardona et al.
MOLECULAR AND CELLULAR BIOLOGY (2014)
KinomeXplorer: an integrated platform for kinome biology studies
Heiko Horn et al.
NATURE METHODS (2014)
Snf1/AMPK promotes SBF and MBF-dependent transcription in budding yeast
Sara Busnelli et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2013)
Identification of dosage-sensitive genes in Saccharomyces cerevisiae using the genetic tug-of-war method
Koji Makanae et al.
GENOME RESEARCH (2013)
Ptc6 Is Required for Proper Rapamycin-Induced Down-Regulation of the Genes Coding for Ribosomal and rRNA Processing Proteins in S-cerevisiae
Asier Gonzalez et al.
PLOS ONE (2013)
Functional mapping of the disparate activities of the yeast moonlighting protein Hal3
J. Albert Abrie et al.
BIOCHEMICAL JOURNAL (2012)
Protein phosphatase Z modulates oxidative stress response in fungi
Eva Leiter et al.
FUNGAL GENETICS AND BIOLOGY (2012)
Cellular Memory of Acquired Stress Resistance in Saccharomyces cerevisiae
Qiaoning Guan et al.
GENETICS (2012)
Phosphorylation of Yeast Hexokinase 2 Regulates Its Nucleocytoplasmic Shuttling
Paula Fernandez-Garcia et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Protein phosphatase CaPpz1 is involved in cation homeostasis, cell wall integrity and virulence of Candida albicans
Csaba Adam et al.
MICROBIOLOGY-SGM (2012)
YeastMine-an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
Rama Balakrishnan et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2012)
Influence of Inositol Pyrophosphates on Cellular Energy Dynamics
Zsolt Szijgyarto et al.
SCIENCE (2011)
Limited dCTP Availability Accounts for Mitochondrial DNA Depletion in Mitochondrial Neurogastrointestinal Encephalomyopathy (MNGIE)
Emiliano Gonzalez-Vioque et al.
PLOS GENETICS (2011)
Snf1/AMPK promotes S-phase entrance by controlling CLB5 transcription in budding yeast
Stefania Pessina et al.
CELL CYCLE (2010)
Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways
Benoit Pinson et al.
GENES & DEVELOPMENT (2009)
Normal Function of the Yeast TOR Pathway Requires the Type 2C Protein Phosphatase Ptc1
Asier Gonzalez et al.
MOLECULAR AND CELLULAR BIOLOGY (2009)
Moonlighting proteins Hal3 and Vhs3 form a heteromeric PPCDC with Ykl088w in yeast CoA biosynthesis
Amparo Ruiz et al.
NATURE CHEMICAL BIOLOGY (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Whi5 Regulation by Site Specific CDK-Phosphorylation in Saccharomyces cerevisiae
Michelle V. Wagner et al.
PLOS ONE (2009)
Gcn4 is required for the response to peroxide stress in the yeast Saccharomyces cerevisiae
Claire Mascarenhas et al.
MOLECULAR BIOLOGY OF THE CELL (2008)
Structure and function of a transcriptional network activated by the MAPK Hog1
Andrew P. Capaldi et al.
NATURE GENETICS (2008)
Mechanisms of Cell Cycle Control Revealed by a Systematic and Quantitative Overexpression Screen in S. cerevisiae
Wei Niu et al.
PLOS GENETICS (2008)
Activation of the Cdc42p GTPase by cyclin-dependent protein kinases in budding yeast
Richelle Sopko et al.
EMBO JOURNAL (2007)
Strategy of Transcription Regulation in the Budding Yeast
Sagi Levy et al.
PLOS ONE (2007)
Hxk2 regulates the phosphorylation state of Mig1 and therefore its nucleocytoplasmic distribution
Deifilia Ahuatzi et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase
Alan M. Moses et al.
GENOME BIOLOGY (2007)
Systematic hybrid LOH: a new method to reduce false positives and negatives during screening of yeast gene deletion libraries
David Alvaro et al.
YEAST (2006)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
pH-responsive, posttranslational regulation of the Trk1 potassium transporter by the type 1-related Ppz1 phosphatase
L Yenush et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Response of the Saccharomyces cerevisiae Mpk1 mitogen-activated protein kinase pathway to increases in internal turgor pressure caused by loss of Ppz protein phosphatases
S Merchan et al.
EUKARYOTIC CELL (2004)
Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1
X Escoté et al.
NATURE CELL BIOLOGY (2004)
Functional characterization of the Saccharomyces cerevisiae VHS3 gene -: A regulatory subunit of the Ppz1 protein phosphatase with novel, phosphatase-unrelated functions
A Ruiz et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress
M Shapira et al.
MOLECULAR BIOLOGY OF THE CELL (2004)
Java Treeview-extensible visualization of microarray data
AJ Saldanha
BIOINFORMATICS (2004)
Cln3 activates G1-specific transcription via phosphorylation of the SBF transcription bound repressor Whi5
RAM de Bruin et al.
CELL (2004)
Open source clustering software
MJL de Hoon et al.
BIOINFORMATICS (2004)
Molecular characterization of Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor
MA García-Gimeno et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Regulation of ENA1 Na+-ATPase gene expression by the Ppz1 protein phosphatase is mediated by the calcineurin pathway
A Ruiz et al.
EUKARYOTIC CELL (2003)
Replication-independent MCB gene induction and deoxyribonucleotide accumulation at G1/S in Saccharomyces cerevisiae
A Koç et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Survival of DNA damage in yeast directly depends on increased dNTP levels allowed by relaxed feedback inhibition of ribonucleotide reductase
A Chabes et al.
CELL (2003)
Identification of multicopy suppressors of cell cycle arrest at the G1-S transition in Saccharomyces cerevisiae
I Muñoz et al.
YEAST (2003)
Hog1 kinase converts the Sko1-Cyc8-Tup1 rperessor complex into an activator that recuits SAGA and SWI/SNF in response to osmotic stress
M Proft et al.
MOLECULAR CELL (2002)
Novel protein phosphatases in yeast -: An update
J Ariño
EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)
The Ppz protein phosphatases are key regulators of K+ and pH homeostasis: implications for salt tolerance, cell wall integrity and cell cycle progression
L Yenush et al.
EMBO JOURNAL (2002)
Saccharomyces cerevisiae is capable of de novo pantothenic acid biosynthesis involving a novel pathway of β-alanine production from spermine
WH White et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Regulation of the Sko1 transcriptional repressor by the Hog1 MAP kinase in response to osmotic stress
M Proft et al.
EMBO JOURNAL (2001)
Remodeling of yeast genome expression in response to environmental changes
HC Causton et al.
MOLECULAR BIOLOGY OF THE CELL (2001)
Signaling through regulated transcription factor interaction: mapping of a regulatory interaction domain in the Myb-related Bas1p
B Pinson et al.
NUCLEIC ACIDS RESEARCH (2000)
Genomic expression programs in the response of yeast cells to environmental changes
AP Gasch et al.
MOLECULAR BIOLOGY OF THE CELL (2000)
Redox regulation of AMP synthesis in yeast: a role of the Bas1p and Bas2p transcription factors
B Pinson et al.
MOLECULAR MICROBIOLOGY (2000)
Regulatory interactions between the Reg1-Glc7 protein phosphatase and the Snf1 protein kinase
P Sanz et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)