Related references
Note: Only part of the references are listed.Interpopulation spread of a parasitic B chromosome is unlikely through males in the grasshopper Eyprepocnemis plorans
Maria Inmaculada Manrique-Poyato et al.
HEREDITY (2020)
DeepTE: a computational method for de novo classification of transposons with convolutional neural network
Haidong Yan et al.
BIOINFORMATICS (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Getting clear about the F-word in genomics
Stefan Linquist et al.
PLOS GENETICS (2020)
Superior field performance of waxy corn engineered using CRISPR-Cas9
Huirong Gao et al.
NATURE BIOTECHNOLOGY (2020)
The impact of transposable elements in adaptive evolution
Lukas Schrader et al.
MOLECULAR ECOLOGY (2019)
Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements
Magali Naville et al.
CURRENT BIOLOGY (2019)
Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens
Emily B. Josephs et al.
GENETICS (2019)
Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells
Christopher D. Todd et al.
ELIFE (2019)
Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
Mitsuhiko P. Sato et al.
DNA RESEARCH (2019)
Small, but surprisingly repetitive genomes: transposon expansion and not polyploidy has driven a doubling in genome size in a metazoan species complex
J. Blommaert et al.
BMC GENOMICS (2019)
Programmed DNA elimination of germline development genes in songbirds
Cormac M. Kinsella et al.
NATURE COMMUNICATIONS (2019)
Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships
Patrice S. Albert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Effects of soil nitrogen on diploid advantage in fireweed, Chamerion angustifolium (Onagraceae)
Alex L. Bales et al.
ECOLOGY AND EVOLUTION (2019)
Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA
Marie-Ka Tilak et al.
GENOME BIOLOGY AND EVOLUTION (2018)
Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution
Irina R. Arkhipova
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Superior ab initio identification, annotation and characterisation of TEs and segmental duplications from genome assemblies
Lu Zeng et al.
PLOS ONE (2018)
Whole genome duplication and transposable element proliferation drive genome expansion in Corydoradinae catfishes
Sarah Marburger et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)
Fantastic Beasts and How To Sequence Them: Ecological Genomics for Obscure Model Organisms
Mikhail V. Matz
TRENDS IN GENETICS (2018)
A machine learning based framework to identify and classify long terminal repeat retrotransposons
Leander Schietgat et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays
Paul Bilinski et al.
PLOS GENETICS (2018)
Landscape of Transposable Elements Focusing on the B Chromosome of the Cichlid Fish Astatotilapia latifasciata
Rafael L. B. Coan et al.
GENES (2018)
Extraordinary Genome Instability and Widespread Chromosome Rearrangements During Vegetative Growth
Mareike Moeller et al.
GENETICS (2018)
How complete are complete genome assemblies?-An avian perspective
Valentina Peona et al.
MOLECULAR ECOLOGY RESOURCES (2018)
Computational tools to unmask transposable elements
Patricia Goerner-Potvin et al.
NATURE REVIEWS GENETICS (2018)
Meiotic drive of female-inherited supernumerary chromosomes in a pathogenic fungus
Michael Habig et al.
ELIFE (2018)
Bridging gaps in transposable element research with single-molecule and single-cell technologies
Claudia Kutter et al.
MOBILE DNA (2018)
Jumping genomic gigantism
Rachel Lockridge Mueller et al.
NATURE ECOLOGY & EVOLUTION (2018)
Ten things you should know about transposable elements
Guillaume Bourque et al.
GENOME BIOLOGY (2018)
The Polyploid Hop: Shifting Challenges and Opportunities Over the Evolutionary Lifespan of Genome Duplications
Pierre Baduel et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2018)
Morphological and taxonomic demarcation of Brachionus asplanchnoidis Charin within the Brachionus plicatilis cryptic species complex (Rotifera, Monogononta)
Evangelia Michaloudi et al.
HYDROBIOLOGIA (2017)
Do genome size differences within Brachionus asplanchnoidis (Rotifera, Monogononta) cause reproductive barriers among geographic populations?
Simone Riss et al.
HYDROBIOLOGIA (2017)
Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy
Scott Mills et al.
HYDROBIOLOGIA (2017)
Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
Matthias H. Weissensteiner et al.
GENOME RESEARCH (2017)
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider et al.
GENOME RESEARCH (2017)
Targeted Deletion of an Entire Chromosome Using CRISPR/Cas9
Fatwa Adikusuma et al.
MOLECULAR THERAPY (2017)
Dynamics of genome size evolution in birds and mammals
Aurelie Kapusta et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Protein-coding genes in B chromosomes of the grasshopper Eyprepocnemis plorans
Beatriz Navarro-Dominguez et al.
SCIENTIFIC REPORTS (2017)
On causal roles and selected effects: our genome is mostly junk
W. Ford Doolittle et al.
BMC BIOLOGY (2017)
Impact of transposable elements on polyploid plant genomes
Carlos M. Vicient et al.
ANNALS OF BOTANY (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost
Susanne Bornelov et al.
GENOME BIOLOGY (2017)
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
Ivan Sovic et al.
BIOINFORMATICS (2016)
Patterns of genome size variation in snapping shrimp
Nicholas W. Jeffery et al.
GENOME (2016)
Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies
Roy N. Platt et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Oxford Nanopore MinION Sequencing and Genome Assembly
Hengyun Lu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
The diversity of fungal genome
Tapan Kumar Mohanta et al.
BIOLOGICAL PROCEDURES ONLINE (2015)
Transposons, Genome Size, and Evolutionary Insights in Animals
Adriana Canapa et al.
CYTOGENETIC AND GENOME RESEARCH (2015)
Satellite DNA in Plants: More than Just Rubbish
Manuel A. Garrido-Ramos
CYTOGENETIC AND GENOME RESEARCH (2015)
Efficient CRISPR-mediated gene targeting and transgene replacement in the beetle Tribolium castaneum
Anna F. Gilles et al.
DEVELOPMENT (2015)
An Evolutionary Classification of Genomic Function
Dan Graur et al.
GENOME BIOLOGY AND EVOLUTION (2015)
De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)
Clement Goubert et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Applying ecological models to communities of genetic elements: the case of neutral theory
Stefan Linquist et al.
MOLECULAR ECOLOGY (2015)
What's in a genome? The C-value enigma and the evolution of eukaryotic genome content
Tyler A. Elliott et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Genome size correlates with reproductive fitness in seed beetles
Goran Arnqvist et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Genome-wide inactivation of porcine endogenous retroviruses (PERVs)
Luhan Yang et al.
SCIENCE (2015)
Nitrogen limitation as a driver of genome size evolution in a group of karst plants
Ming Kang et al.
SCIENTIFIC REPORTS (2015)
PacBio Sequencing and Its Applications
Anthony Rhoads et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
Satellite DNA as a Driver of Population Divergence in the Red Flour Beetle Tribolium castaneum
Isidoro Feliciello et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
C. Schloetterer et al.
HEREDITY (2015)
Programmed DNA elimination in multicellular organisms
Jianbin Wang et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)
A field guide to whole-genome sequencing, assembly and annotation
Robert Ekblom et al.
EVOLUTIONARY APPLICATIONS (2014)
Genome size evolution in Ontario ferns (Polypodiidae): evolutionary correlations with cell size, spore size, and habitat type and an absence of genome downsizing
Thomas A. Henry et al.
GENOME (2014)
Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes
Shengfeng Huang et al.
NATURE COMMUNICATIONS (2014)
Conserved syntenic clusters of protein coding genes are missing in birds
Peter V. Lovell et al.
GENOME BIOLOGY (2014)
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
Petr Novak et al.
BIOINFORMATICS (2013)
Maize chromosomal knobs are located in gene-dense areas and suppress local recombination
Rashin Ghaffari et al.
CHROMOSOMA (2013)
Meiotic Adaptation to Genome Duplication in Arabidopsis arenosa
Levi Yant et al.
CURRENT BIOLOGY (2013)
What makes a model organism?
Sabina Leonelli et al.
ENDEAVOUR (2013)
Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly
Yen-Chun Chen et al.
PLOS ONE (2013)
Is junk DNA bunk? A critique of ENCODE
W. Ford Doolittle
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Retroviruses and the Placenta
David Haig
CURRENT BIOLOGY (2012)
Causes and Consequences of Genome Expansion in Fungi
Yogeshwar D. Kelkar et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Repetitive DNA and next-generation sequencing: computational challenges and solutions
Todd J. Treangen et al.
NATURE REVIEWS GENETICS (2012)
Comparative Analysis of the Recently Discovered hAT Transposon TcBuster in Human Cells
Lauren E. Woodard et al.
PLOS ONE (2012)
Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing
Ronnie de Jonge et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Geometrical constraints in the scaling relationships between genome size, cell size and cell cycle length in herbaceous plants
Irena Simova et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Experimental evolution
Tadeusz J. Kawecki et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
Recombination Drives Vertebrate Genome Contraction
Kiwoong Nam et al.
PLOS GENETICS (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
Genome size evolution at the speciation level: The cryptic species complex Brachionus plicatilis (Rotifera)
Claus-Peter Stelzer et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
Maud I. Tenaillon et al.
GENOME BIOLOGY AND EVOLUTION (2011)
A first assessment of genome size diversity in Monogonont rotifers
Claus-Peter Stelzer
HYDROBIOLOGIA (2011)
Nuclear Genome Size: Are We Getting Closer?
Jaroslav Dolezel et al.
CYTOMETRY PART A (2010)
Evolutionary consequences of autopolyploidy
Christian Parisod et al.
NEW PHYTOLOGIST (2010)
Genome streamlining and the elemental costs of growth
Dag O. Hessen et al.
TRENDS IN ECOLOGY & EVOLUTION (2010)
Spontaneous Mutation Accumulation Studies in Evolutionary Genetics
Daniel L. Halligan et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)
Ploidy and the Causes of Genomic Evolution
Aleeza C. Gerstein et al.
JOURNAL OF HEREDITY (2009)
Cytochemistry and C-values: The less-well-known world of nuclear DNA amounts
J. Greilhuber
ANNALS OF BOTANY (2008)
Establishment of Tribolium as a Genetic Model System and Its Early Contributions to Evo-Devo
Rob Denell
GENETICS (2008)
Enchilada redux: how complete is your genome sequence?
Renyi Liu et al.
NEW PHYTOLOGIST (2008)
Genome size is a strong predictor of cell size and stomatal density in angiosperms
Jeremy M. Beaulieu et al.
NEW PHYTOLOGIST (2008)
Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome
Suzhi Wang et al.
GENOME BIOLOGY (2008)
The evolutionary consequences of polyploidy
Sarah P. Otto
CELL (2007)
Prediction of effective genome size in metagenomic samples
Jeroen Raes et al.
GENOME BIOLOGY (2007)
Causes and effects of nuclear genome reduction
PJ Keeling et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
The advantages and disadvantages of being polyploid
L Comai
NATURE REVIEWS GENETICS (2005)
Why repetitive DNA is essential to genome function
JA Shapiro et al.
BIOLOGICAL REVIEWS (2005)
The C-value enigma in plants and animals: A review of parallels and an appeal for partnership
TR Gregory
ANNALS OF BOTANY (2005)
The origin, evolution and proposed stabilization of the terms genome size' and 'C-value' to describe nuclear DNA contents
J Greilhuber et al.
ANNALS OF BOTANY (2005)
Economy, speed and size matter: Evolutionary forces driving nuclear genome miniaturization and expansion
T Cavalier-Smith
ANNALS OF BOTANY (2005)
The nucleotypic effects of cellular DNA content in cartilaginous and ray-finned fishes
DC Hardie et al.
GENOME (2003)
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
C Vitte et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Mutational equilibrium model of genome size evolution
DA Petrov
THEORETICAL POPULATION BIOLOGY (2002)
From pixels to picograms: A beginners' guide to genome quantification by Feulgen image analysis densitometry
DC Hardie et al.
JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY (2002)
Transposable elements and the evolution of genome size in eukaryotes
MG Kidwell
GENETICA (2002)
The role of selfish genetic elements in eukaryotic evolution
GDD Hurst et al.
NATURE REVIEWS GENETICS (2001)
Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma
TR Gregory
BIOLOGICAL REVIEWS (2001)
B-chromosome evolution
JPM Camacho et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2000)