4.8 Article

Rapid, robust plasmid verification by de novo assembly of short sequencing reads

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation

Jennifer Chiniquy et al.

BMC GENOMICS (2020)

Review Multidisciplinary Sciences

Multiplexed CRISPR technologies for gene editing and transcriptional regulation

Nicholas S. McCarty et al.

NATURE COMMUNICATIONS (2020)

Article Biochemical Research Methods

Universal loop assembly: open, efficient and cross-kingdom DNA fabrication

Bernardo Pollak et al.

SYNTHETIC BIOLOGY (2020)

Article Computer Science, Information Systems

Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution

Diptendu Mohan Kar et al.

JOURNAL OF COMPUTER SECURITY (2020)

Editorial Material Multidisciplinary Sciences

Building a global alliance of biofoundries

Nathan Hillson et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

A standard for near-scarless plasmid construction using reusable DNA parts

Xiaoqiang Ma et al.

NATURE COMMUNICATIONS (2019)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

High-throughput creation and functional profiling of DNA sequence variant libraries using CRISPR-Cas9 in yeast

Xiaoge Guo et al.

NATURE BIOTECHNOLOGY (2018)

Editorial Material Biotechnology & Applied Microbiology

Cyberbiosecurity: From Naive Trust to Risk Awareness

Jean Peccoud et al.

TRENDS IN BIOTECHNOLOGY (2018)

Article Polymer Science

Long-Term Stability and Integrity of Plasmid-Based DNA Data Storage

Hoang Hiep Nguyen et al.

POLYMERS (2018)

Article Biochemical Research Methods

Streamlined generation of plant virus infectious clones using the pLX mini binary vectors

Fabio Pasin et al.

JOURNAL OF VIROLOGICAL METHODS (2018)

Article Biotechnology & Applied Microbiology

A highly parallel strategy for storage of digital information in living cells

Azat Akhmetov et al.

BMC BIOTECHNOLOGY (2018)

Proceedings Paper Computer Science, Theory & Methods

Digital Signatures to Ensure the Authenticity and Integrity of Synthetic DNA Molecules

Diptendu Mohan Kar et al.

NSPW '18: PROCEEDINGS OF THE NEW SECURITY PARADIGMS WORKSHOP (2018)

Article Biotechnology & Applied Microbiology

Cyberbiosecurity: An Emerging New Discipline to Help Safeguard the Bioeconomy

Randall S. Murch et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2018)

Article Biotechnology & Applied Microbiology

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

Andrew D. Garst et al.

NATURE BIOTECHNOLOGY (2017)

Review Biotechnology & Applied Microbiology

Engineering biological systems using automated biofoundries

Ran Chao et al.

METABOLIC ENGINEERING (2017)

Article Multidisciplinary Sciences

An Argonaute phosphorylation cycle promotes microRNA-mediated silencing

Ryan J. Golden et al.

NATURE (2017)

Article Multidisciplinary Sciences

DNA Fountain enables a robust and efficient storage architecture

Yaniv Erlich et al.

SCIENCE (2017)

Article Biochemical Research Methods

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Biochemical Research Methods

HYBRIDSPADES: an algorithm for hybrid assembly of short and long reads

Dmitry Antipov et al.

BIOINFORMATICS (2016)

Article Biochemical Research Methods

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

Melanie Schirmer et al.

BMC BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq

Diego Adhemar Jaitin et al.

Article Multidisciplinary Sciences

Genetic circuit design automation

Alec A. K. Nielsen et al.

SCIENCE (2016)

Article Biochemical Research Methods

End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis

Gregory Linshiz et al.

JOURNAL OF BIOLOGICAL ENGINEERING (2016)

Article Biochemical Research Methods

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality

Stefano Lonardi et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Reproducibility: changing the policies and culture of cell line authentication

Leonard P. Freedman et al.

NATURE METHODS (2015)

Review Cell Biology

Bricks and blueprints: methods and standards for DNA assembly

Arturo Casini et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

GenoLIB: a database of biological parts derived from a library of common plasmid features

Neil R. Adames et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biotechnology & Applied Microbiology

Circlator: automated circularization of genome assemblies using long sequencing reads

Martin Hunt et al.

GENOME BIOLOGY (2015)

Article Biochemical Research Methods

Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors

Mandy L. Wilson et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences

Sagar M. Utturkar et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Functional optimization of gene clusters by combinatorial design and assembly

Michael J. Smanski et al.

NATURE BIOTECHNOLOGY (2014)

Editorial Material Multidisciplinary Sciences

Fixing problems with cell lines

Jon R. Lorsch et al.

SCIENCE (2014)

Article Genetics & Heredity

Reducing INDEL calling errors in whole genome and exome sequencing data

Han Fang et al.

GENOME MEDICINE (2014)

Article Biochemistry & Molecular Biology

Sequence verification of synthetic DNA by assembly of sequencing reads

Mandy L. Wilson et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Letter Biotechnology & Applied Microbiology

Essential information for synthetic DNA sequences

Jean Peccoud et al.

NATURE BIOTECHNOLOGY (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Multidisciplinary Sciences

A predicted hairpin cluster correlates with barriers to PCR, sequencing and possibly BAC recombineering

Brian L. Nelms et al.

SCIENTIFIC REPORTS (2011)

Article Biotechnology & Applied Microbiology

High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing

David Sims et al.

GENOME BIOLOGY (2011)

Article Oncology

Check your cultures! A list of cross-contaminated or misidentified cell lines

Amanda Capes-Davis et al.

INTERNATIONAL JOURNAL OF CANCER (2010)

Article Biochemical Research Methods

Enzymatic assembly of DNA molecules up to several hundred kilobases

Daniel G. Gibson et al.

NATURE METHODS (2009)

Article Biochemistry & Molecular Biology

Writing DNA with GenoCAD™

Michael J. Czar et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Biotechnology & Applied Microbiology

Gene synthesis demystified

Michael J. Czar et al.

TRENDS IN BIOTECHNOLOGY (2009)

Article Biochemistry & Molecular Biology

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino et al.

GENOME RESEARCH (2008)

Article Multidisciplinary Sciences

Accurate whole human genome sequencing using reversible terminator chemistry

David R. Bentley et al.

NATURE (2008)

Review Biotechnology & Applied Microbiology

Next-generation DNA sequencing

Jay Shendure et al.

NATURE BIOTECHNOLOGY (2008)

Article Multidisciplinary Sciences

Targeted Development of Registries of Biological Parts

Jean Peccoud et al.

PLOS ONE (2008)

Review Oncology

Persistent use of false cell lines

Marc Lacroix

INTERNATIONAL JOURNAL OF CANCER (2008)