Related references
Note: Only part of the references are listed.Differential expression of human tRNA genes drives the abundance of tRNA-derived fragments
Adrian Gabriel Torres et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Novel upregulation of amyloid-β precursor protein (APP) by microRNA-346 via targeting of APP mRNA 5′-untranslated region: Implications in Alzheimer's disease
Justin M. Long et al.
MOLECULAR PSYCHIATRY (2019)
MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects
Venetia Pliatsika et al.
NUCLEIC ACIDS RESEARCH (2018)
Drosophila tsRNAs preferentially suppress general translation machinery via antisense pairing and participate in cellular starvation response
Shiqi Luo et al.
NUCLEIC ACIDS RESEARCH (2018)
tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner
Canan Kuscu et al.
RNA (2018)
Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer
Rogan G. Magee et al.
SCIENTIFIC REPORTS (2018)
tRNA-Derived Small RNA: A Novel Regulatory Small Non-Coding RNA
Siqi Li et al.
GENES (2018)
Defining a microRNA-mRNA interaction map for calcineurin inhibitor induced nephrotoxicity
Christopher J. Benway et al.
AMERICAN JOURNAL OF TRANSPLANTATION (2018)
The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic
Valerie Cognat et al.
NUCLEIC ACIDS RESEARCH (2017)
A transfer-RNA-derived small RNA regulates ribosome biogenesis
Hak Kyun Kim et al.
NATURE (2017)
Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs
Ze Chen et al.
PLOS ONE (2017)
MiR-483-5p promotes IGF-II transcription and is associated with poor prognosis of hepatocellular carcinoma
Shaohui Tang et al.
ONCOTARGET (2017)
tRF-Leu-CAG promotes cell proliferation and cell cycle in non-small cell lung cancer
Yang Shao et al.
CHEMICAL BIOLOGY & DRUG DESIGN (2017)
Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts
Austin E. Gillen et al.
BMC GENOMICS (2016)
A Broad RNA Virus Survey Reveals Both miRNA Dependence and Functional Sequestration
Troels K. H. Scheel et al.
CELL HOST & MICROBE (2016)
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
Eric L. Van Nostrand et al.
NATURE METHODS (2016)
The widespread occurrence of tRNA-derived fragments in Saccharomyces cerevisiae
Kamilla Bakowska-Zywicka et al.
FEBS OPEN BIO (2016)
The Landscape of microRNA Targeting in Prostate Cancer Defined by AGO-PAR-CLIP
Mark P. Hamilton et al.
NEOPLASIA (2016)
JBrowse: a dynamic web platform for genome visualization and analysis
Robert Buels et al.
GENOME BIOLOGY (2016)
HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages
Valentina Vongrad et al.
PLOS ONE (2015)
Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers
Shozo Honda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
EBV BART MicroRNAs Target Multiple Pro-apoptotic Cellular Genes to Promote Epithelial Cell Survival
Dong Kang et al.
PLOS PATHOGENS (2015)
Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets
Pankaj Kumar et al.
BMC BIOLOGY (2014)
HITS-CLIP reveals key regulators of nuclear receptor signaling in breast cancer
Manoj M. Pillai et al.
BREAST CANCER RESEARCH AND TREATMENT (2014)
Angiogenin-Cleaved tRNA Halves Interact with Cytochrome c, Protecting Cells from Apoptosis during Osmotic Stress
Mridusmita Saikia et al.
MOLECULAR AND CELLULAR BIOLOGY (2014)
Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
Michael J. Moore et al.
NATURE PROTOCOLS (2014)
Small regulatory RNAs in Archaea
Julia Babski et al.
RNA BIOLOGY (2014)
Genome-Wide Analysis of miRNA-mRNA Interactions in Marrow Stromal Cells
Ilango Balakrishnan et al.
STEM CELLS (2014)
Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
Aleksandra Helwak et al.
CELL (2013)
The Cancer Genome Atlas Pan-Cancer analysis project
John N. Weinstein et al.
NATURE GENETICS (2013)
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
Roy L. Maute et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Site identification in high-throughput RNA-protein interaction data
Philip J. Uren et al.
BIOINFORMATICS (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
A Tetrahymena Piwi Bound to Mature tRNA 3′ Fragments Activates the Exonuclease Xrn2 for RNA Processing in the Nucleus
Mary T. Couvillion et al.
MOLECULAR CELL (2012)
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs
Zhihua Li et al.
NUCLEIC ACIDS RESEARCH (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
The Sequence Read Archive
Rasko Leinonen et al.
NUCLEIC ACIDS RESEARCH (2011)
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
Markus Hafner et al.
CELL (2010)
Detection of nonneutral substitution rates on mammalian phylogenies
Katherine S. Pollard et al.
GENOME RESEARCH (2010)
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
Julian Koenig et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Stressing Out over tRNA Cleavage
Debrah M. Thompson et al.
CELL (2009)
MicroRNAs: Target Recognition and Regulatory Functions
David P. Bartel
CELL (2009)
Stress induces tRNA cleavage by angiogenin in mammalian cells
Hanjiang Fu et al.
FEBS LETTERS (2009)
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)
Yong Sun Lee et al.
GENES & DEVELOPMENT (2009)
Most mammalian mRNAs are conserved targets of microRNAs
Robin C. Friedman et al.
GENOME RESEARCH (2009)
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
Kim D. Pruitt et al.
GENOME RESEARCH (2009)
The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae
Debrah M. Thompson et al.
JOURNAL OF CELL BIOLOGY (2009)
Angiogenin cleaves tRNA and promotes stress-induced translational repression
Satoshi Yamasaki et al.
JOURNAL OF CELL BIOLOGY (2009)
Modulation of Gene Expression by Human Cytosolic tRNase ZL through 5′-Half-tRNA
Reyad A. Elbarbary et al.
PLOS ONE (2009)
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
Christian Cole et al.
RNA (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation
Ulf Andersson Orom et al.
MOLECULAR CELL (2008)
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Donny D. Licatalosi et al.
NATURE (2008)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
MicroRNAs: Genomics, biogenesis, mechanism, and function
DP Bartel
CELL (2004)