Related references
Note: Only part of the references are listed.RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
In depth annotation of the Anopheles gambiae mosquito midgut transcriptome
Alejandro Padron et al.
BMC GENOMICS (2014)
RNA-sequencing analysis reveals abundant developmental stage-specific and immunity-related genes in the pollen beetle Meligethes aeneus
H. Vogel et al.
INSECT MOLECULAR BIOLOGY (2014)
The evolution of lncRNA repertoires and expression patterns in tetrapods
Anamaria Necsulea et al.
NATURE (2014)
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
Rob Patro et al.
NATURE BIOTECHNOLOGY (2014)
Long non-coding RNAs: new players in cell differentiation and development
Alessandro Fatica et al.
NATURE REVIEWS GENETICS (2014)
Evolutionary dynamics of coding and non-coding transcriptomes
Anamaria Necsulea et al.
NATURE REVIEWS GENETICS (2014)
Pfam: the protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2014)
Heritable strategies for controlling insect vectors of disease
Austin Burt
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi
Xiaofang Jiang et al.
GENOME BIOLOGY (2014)
iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
Kun Sun et al.
BMC GENOMICS (2013)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Long Noncoding RNAs: Past, Present, and Future
Johnny T. Y. Kung et al.
GENETICS (2013)
Structure-based whole-genome realignment reveals many novel noncoding RNAs
Sebastian Will et al.
GENOME RESEARCH (2013)
Dealing with Pervasive Transcription
Torben Heick Jensen et al.
MOLECULAR CELL (2013)
Differential analysis of gene regulation at transcript resolution with RNA-seq
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2013)
Targeting long non-coding RNA to therapeutically upregulate gene expression
Claes Wahlestedt
NATURE REVIEWS DRUG DISCOVERY (2013)
Structure and function of long noncoding RNAs in epigenetic regulation
Tim R. Mercer et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
Robert M. Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2013)
The Genome of Anopheles darlingi, the main neotropical malaria vector
Osvaldo Marinotti et al.
NUCLEIC ACIDS RESEARCH (2013)
Widespread purifying selection on RNA structure in mammals
Martin A. Smith et al.
NUCLEIC ACIDS RESEARCH (2013)
Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features
Jie Lv et al.
NUCLEIC ACIDS RESEARCH (2013)
Blood meal-induced changes to antennal transcriptome profiles reveal shifts in odor sensitivities in Anopheles gambiae
David C. Rinker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Small RNAs: a new frontier in mosquito biology
Keira J. Lucas et al.
TRENDS IN PARASITOLOGY (2013)
Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs
Matthew J. Hangauer et al.
PLOS GENETICS (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
Mosquito Genomics: Progress and Challenges
David W. Severson et al.
ANNUAL REVIEW OF ENTOMOLOGY, VOL 57 (2012)
Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
Lei Sun et al.
BMC BIOINFORMATICS (2012)
Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome
Robert S. Young et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
Andrea Pauli et al.
GENOME RESEARCH (2012)
Long noncoding RNAs in C. elegans
Jin-Wu Nam et al.
GENOME RESEARCH (2012)
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien et al.
GENOME RESEARCH (2012)
GENCODE: The reference human genome annotation for The ENCODE Project
Jennifer Harrow et al.
GENOME RESEARCH (2012)
Transcription Profiling Associated With Life Cycle of Anopheles gambiae
B. W. Harker et al.
JOURNAL OF MEDICAL ENTOMOLOGY (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics
Karine Megy et al.
NUCLEIC ACIDS RESEARCH (2012)
The novel long non-coding RNA CRG regulates Drosophila locomotor behavior
Meixia Li et al.
NUCLEIC ACIDS RESEARCH (2012)
Epigenetic Regulation by Long Noncoding RNAs
Jeannie T. Lee
SCIENCE (2012)
Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression
Claudia Kutter et al.
PLOS GENETICS (2012)
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
Michael F. Lin et al.
BIOINFORMATICS (2011)
Dissecting gene expression in mosquito
Rayna Stamboliyska et al.
BMC GENOMICS (2011)
Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding
R. Jason Pitts et al.
BMC GENOMICS (2011)
PHAST and RPHAST: phylogenetic analysis with space/time models
Melissa J. Hubisz et al.
BRIEFINGS IN BIOINFORMATICS (2011)
Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution
Igor Ulitsky et al.
CELL (2011)
A Conserved Long Noncoding RNA Affects Sleep Behavior in Drosophila
Alexey A. Soshnev et al.
GENETICS (2011)
The influence of mosquito resting behaviour and associated microclimate for malaria risk
Krijn P. Paaijmans et al.
MALARIA JOURNAL (2011)
A high-resolution map of human evolutionary constraint using 29 mammals
Kerstin Lindblad-Toh et al.
NATURE (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
Genome-wide profiling of diel and circadian gene expression in the malaria vector Anopheles gambiae
Samuel S. C. Rund et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Mitchell Guttman et al.
NATURE BIOTECHNOLOGY (2010)
Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
Peter Arensburger et al.
SCIENCE (2010)
Widespread Divergence Between Incipient Anopheles gambiae Species Revealed by Whole Genome Sequences
M. K. N. Lawniczak et al.
SCIENCE (2010)
Evolution and Functions of Long Noncoding RNAs
Chris P. Ponting et al.
CELL (2009)
The salivary transcriptome of Anopheles gambiae (Diptera: Culicidae) larvae: A microarray-based analysis
M. Neira Oviedo et al.
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (2009)
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
Mitchell Guttman et al.
NATURE (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
The genome of the model beetle and pest Tribolium castaneum
Stephen Richards et al.
NATURE (2008)
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
Alexander Stark et al.
NATURE (2007)
Life cycle transcriptome of the malaria mosquito anopheles gambiae and comparison with the fruitfly Drosophila melanogaster
Anastasios C. Koutsos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Genome sequence of Aedes aegypti, a major arbovirus vector
Vishvanath Nene et al.
SCIENCE (2007)
Quantification of ortholog losses in insects and vertebrates
Stefan Wyder et al.
GENOME BIOLOGY (2007)
Dosage compensation in mammals: fine-tuning the expression of the X chromosome
Edith Heard et al.
GENES & DEVELOPMENT (2006)
Complex loci in human and mouse genomes
Par G. Engstrom et al.
PLOS GENETICS (2006)
Genome-wide analysis of gene expression in adult Anopheles gambiae
O Marinotti et al.
INSECT MOLECULAR BIOLOGY (2006)
The transcriptional landscape of the mammalian genome
P Carninci et al.
SCIENCE (2005)
Aligning multiple genomic sequences with the threaded blockset aligner
M Blanchette et al.
GENOME RESEARCH (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
The TIGRFAMs database of protein families
DH Haft et al.
NUCLEIC ACIDS RESEARCH (2003)
Multiplex PCR assay for malaria vector Anopheles minimus and four related species in the Myzomyia Series from Southeast Asia
HK Phuc et al.
MEDICAL AND VETERINARY ENTOMOLOGY (2003)
The genome sequence of the malaria mosquito Anopheles gambiae
RA Holt et al.
SCIENCE (2002)
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
J Gough et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)