4.6 Article

Core microbial communities of lacustrine microbialites sampled along an alkalinity gradient

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data

Lucas Czech et al.

BIOINFORMATICS (2020)

Article Geochemistry & Geophysics

Fe-bearing phases in modern lacustrine microbialites from Mexico

Nina Zeyen et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2019)

Article Evolutionary Biology

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

Pierre Barbera et al.

SYSTEMATIC BIOLOGY (2019)

Review Biotechnology & Applied Microbiology

Microbially induced calcium carbonate precipitation: a widespread phenomenon in the biological world

Mostafa Seifan et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)

Article Ecology

Evolutionary history constrains microbial traits across environmental variation

Ember M. Morrissey et al.

NATURE ECOLOGY & EVOLUTION (2019)

Article Multidisciplinary Sciences

The future of Blue Carbon science

Peter I. Macreadie et al.

NATURE COMMUNICATIONS (2019)

Article Microbiology

Exploring Biogeochemistry and Microbial Diversity of Extant Microbialites in Mexico and Cuba

Patricia M. Valdespino-Castillo et al.

FRONTIERS IN MICROBIOLOGY (2018)

Article Ecology

Functional shifts in microbial mats recapitulate early Earth metabolic transitions

Ana Gutierrez-Preciado et al.

NATURE ECOLOGY & EVOLUTION (2018)

Article Ecology

High taxonomic variability despite stable functional structure across microbial communities

Stilianos Louca et al.

NATURE ECOLOGY & EVOLUTION (2017)

Review Biochemistry & Molecular Biology

Defining the Core Microbiome in Corals' Microbial Soup

Alejandra Hernandez-Agreda et al.

TRENDS IN MICROBIOLOGY (2017)

Proceedings Paper Geology

Geochemical conditions allowing the formation of modern lacustrine microbialites

Nina Zeyen et al.

15TH WATER-ROCK INTERACTION INTERNATIONAL SYMPOSIUM, WRI-15 (2017)

Review Geosciences, Multidisciplinary

Modern lacustrine microbialites: Towards a synthesis of aqueous and carbonate geochemistry and mineralogy

Anderson A. P. Chagas et al.

EARTH-SCIENCE REVIEWS (2016)

Article Geosciences, Multidisciplinary

Early non-marine life: Evaluating the biogenicity of Mesoproterozoic fluvial-lacustrine stromatolites

Nicholas D. Fedorchuk et al.

PRECAMBRIAN RESEARCH (2016)

Article Multidisciplinary Sciences

Extreme cellular adaptations and cell differentiation required by a cyanobacterium for carbonate excavation

Brandon Scott Guida et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Microbiology

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community

Richard Allen White et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

PEERJ (2016)

Article Microbiology

A new view of the tree of life

Laura A. Hug et al.

NATURE MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

New multi-scale perspectives on the stromatolites of Shark Bay, Western Australia

E. P. Suosaari et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

Microbial and diagenetic steps leading to the mineralisation of Great Salt Lake microbialites

Aurelie Pace et al.

SCIENTIFIC REPORTS (2016)

Review Multidisciplinary Sciences

Microbiomes in light of traits: A phylogenetic perspective

Jennifer B. H. Martiny et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Swarm v2: highly-scalable and high-resolution amplicon clustering

Frederic Mahe et al.

PEERJ (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Engineering, Environmental

A Greenhouse-Scale Photosynthetic Microbial Bioreactor for Carbon Sequestration in Magnesium Carbonate Minerals

Jenine McCutcheon et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biotechnology & Applied Microbiology

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Microbiology

Bionnineralization of calcium carbonates and their engineered applications: a review

Navdeep K. Dhami et al.

FRONTIERS IN MICROBIOLOGY (2013)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Geochemistry & Geophysics

Calcium carbonate precipitation by anoxygenic phototrophic bacteria

Irina A. Bundeleva et al.

CHEMICAL GEOLOGY (2012)

Article Microbiology

Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing

Jennifer M. Mobberley et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Microbiology

Microbialite genetic diversity and composition relate to environmental variables

Carla M. Centeno et al.

FEMS MICROBIOLOGY ECOLOGY (2012)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Engineering, Environmental

Microbially Mediated Mineral Carbonation: Roles of Phototrophy and Heterotrophy

Ian M. Power et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)

Article Biotechnology & Applied Microbiology

Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain

Fernando Santos et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2010)

Article Geochemistry & Geophysics

Lake Van, Eastern Anatolia, Hydrochemistry and History

Andreas Reimer et al.

AQUATIC GEOCHEMISTRY (2009)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Review Geosciences, Multidisciplinary

Processes of carbonate precipitation in modern microbial mats

Christophe Dupraz et al.

EARTH-SCIENCE REVIEWS (2009)

Article Limnology

Limnology of Pavilion Lake, B. C., Canada - Characterization of a microbialite forming environment

Darlene S. S. Lim et al.

FUNDAMENTAL AND APPLIED LIMNOLOGY (2009)

Article Multidisciplinary Sciences

Controls on development and diversity of Early Archean stromatolites

Abigail C. Allwood et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

Comparative Characterization of the Microbial Diversities of an Artificial Microbialite Model and a Natural Stromatolite

Stephanie A. Havemann et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Article Geosciences, Multidisciplinary

Water chemistry of lakes related to active and inactive Mexican volcanoes

Maria Aurora Armienta et al.

JOURNAL OF VOLCANOLOGY AND GEOTHERMAL RESEARCH (2008)

Article Computer Science, Interdisciplinary Applications

The ade4 package: Implementing the duality diagram for ecologists

Stephane Dray et al.

JOURNAL OF STATISTICAL SOFTWARE (2007)

Article Multidisciplinary Sciences

Nanoscale detection of organic signatures in carbonate microbialites

Karim Benzerara et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Stromatolite reef from the Early Archaean era of Australia

Abigail C. Allwood et al.

NATURE (2006)

Article Biotechnology & Applied Microbiology

Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia

D Papineau et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Review Biochemistry & Molecular Biology

Microbial lithification in marine stromatolites and hypersaline mats

C Dupraz et al.

TRENDS IN MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Photosynthetic microbial mats in the 3,416-Myr-old ocean

MM Tice et al.

NATURE (2004)

Article Microbiology

Preferential PCR amplification of parasitic protistan small subunit rDNA from metazoan tissues

SM Bower et al.

JOURNAL OF EUKARYOTIC MICROBIOLOGY (2004)

Article Multidisciplinary Sciences

Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane

W Michaelis et al.

SCIENCE (2002)

Review Microbiology

The significance of inter- and intraspecific variation in bacterivorous and herbivorous protists

T Weisse

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2002)

Article Multidisciplinary Sciences

Modern freshwater microbialite analogues for ancient dendritic reef structures

B Laval et al.

NATURE (2000)