Related references
Note: Only part of the references are listed.Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
The Need for a Predictive, Context-Dependent Approach to the Application of Stress Hormones in Conservation
Christine L. Madliger et al.
CONSERVATION BIOLOGY (2014)
Metabolic responses to adrenocorticotropic hormone (ACTH) vary with life-history stage in adult male northern elephant seals
David C. Ensminger et al.
GENERAL AND COMPARATIVE ENDOCRINOLOGY (2014)
Elevated carboxyhemoglobin in a marine mammal, the northern elephant seal
Michael S. Tift et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2014)
Minke whale genome and aquatic adaptation in cetaceans
Hyung-Soon Yim et al.
NATURE GENETICS (2014)
Adiposity and Fat Metabolism in Lactating and Fasting Northern Elephant Seals
Daniel E. Crocker et al.
ADVANCES IN NUTRITION (2014)
Measures of physiological stress: a transparent or opaque window into the status, management and conservation of species?
Ben Dantzer et al.
CONSERVATION PHYSIOLOGY (2014)
EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
Ning Leng et al.
BIOINFORMATICS (2013)
Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal
Joseph I. Hoffman et al.
BMC GENOMICS (2013)
Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era
Robert Alan Edwards et al.
BMC GENOMICS (2013)
Characterization of differential transcript abundance through time during Nematostella vectensis development
Rebecca Rae Helm et al.
BMC GENOMICS (2013)
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
Ya Yang et al.
BMC GENOMICS (2013)
Assessing De Novo transcriptome assembly metrics for consistency and utility
Shawn T. O'Neil et al.
BMC GENOMICS (2013)
Stress response and adaptation: A new molecular toolkit for the 21st century
Kenneth B. Storey et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2013)
Genome-Wide Scans for Candidate Genes Involved in the Aquatic Adaptation of Dolphins
Yan-Bo Sun et al.
GENOME BIOLOGY AND EVOLUTION (2013)
The Many Faces of C/EBPδ and their Relevance for Inflammation and Cancer
Kuppusamy Balamurugan et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES (2013)
Prolonged food deprivation increases mRNA expression of deiodinase 1 and 2, and thyroid hormone receptor β-1 in a fasting-adapted mammal
Bridget Martinez et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2013)
Activation of systemic, but not local, renin-angiotensin system is associated with upregulation of TNF-α during prolonged fasting in northern elephant seal pups
Miwa Suzuki et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2013)
Prolonged fasting activates Nrf2 in post-weaned elephant seals
Jose Pablo Vazquez-Medina et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2013)
Metabolic functions of glucocorticoid receptor in skeletal muscle
Taiyi Kuo et al.
MOLECULAR AND CELLULAR ENDOCRINOLOGY (2013)
Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis
Tobias L. Lenz et al.
MOLECULAR ECOLOGY (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
A Non-Traditional Model of the Metabolic Syndrome: The Adaptive Significance of Insulin Resistance in Fasting-Adapted Seals
Dorian S. Houser et al.
Frontiers in Endocrinology (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species
Emily A. Hornett et al.
BMC GENOMICS (2012)
Hormone and metabolite changes associated with extended breeding fasts in male northern elephant seals (Mirounga angustirostris)
Daniel E. Crocker et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2012)
Coping with physiological oxidative stress: a review of antioxidant strategies in seals
Jose Pablo Vazquez-Medina et al.
JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY (2012)
In the face of hypoxia: myoglobin increases in response to hypoxic conditions and lipid supplementation in cultured Weddell seal skeletal muscle cells
Michael A. De Miranda et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2012)
Sex differences in fuel use and metabolism during development in fasting juvenile northern elephant seals
Elizabeth J. Kelso et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2012)
Reference-free transcriptome assembly in non-model animals from next-generation sequencing data
V. Cahais et al.
MOLECULAR ECOLOGY RESOURCES (2012)
A beginner's guide to eukaryotic genome annotation
Mark Yandell et al.
NATURE REVIEWS GENETICS (2012)
The Effects of Handling and Anesthetic Agents on the Stress Response and Carbohydrate Metabolism in Northern Elephant Seals
Cory D. Champagne et al.
PLOS ONE (2012)
Glut4 is upregulated despite decreased insulin signaling during prolonged fasting in northern elephant seal pups
Jose A. Viscarra et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2011)
Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
Qiong-Yi Zhao et al.
BMC BIOINFORMATICS (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors
Cecilia C. Sanchez et al.
BMC GENOMICS (2011)
Apnea stimulates the adaptive response to oxidative stress in elephant seal pups
Jose Pablo Vazquez-Medina et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2011)
Gene discovery in the Antarctic fur seal (Arctocephalus gazella) skin transcriptome
Joseph I. Hoffman
MOLECULAR ECOLOGY RESOURCES (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Whole transcriptome analysis of the fasting and fed Burmese python heart: insights into extreme physiological cardiac adaptation
Christopher E. Wall et al.
PHYSIOLOGICAL GENOMICS (2011)
Deep Sequencing the Transcriptome Reveals Seasonal Adaptive Mechanisms in a Hibernating Mammal
Marshall Hampton et al.
PLOS ONE (2011)
Biomedical Cloud Computing With Amazon Web Services
Vincent A. Fusaro et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
The real cost of sequencing: higher than you think!
Andrea Sboner et al.
GENOME BIOLOGY (2011)
CCAAT/enhancer binding protein-δ expression is increased in fast skeletal muscle by food deprivation and regulates myostatin transcription in vitro
David L. Allen et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2010)
Transformation of metabolism with age and lifestyle in Antarctic seals: a case study of systems biology approach to cross-species microarray experiment
Andrey Ptitsyn et al.
BMC SYSTEMS BIOLOGY (2010)
The case for cloud computing in genome informatics
Lincoln D. Stein
GENOME BIOLOGY (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Extreme hypoxemic tolerance and blood oxygen depletion in diving elephant seals
Jessica U. Meir et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
A transcriptomic analysis of the stress induced by capture-release health assessment studies in wild dolphins (Tursiops truncatus)
A. Mancia et al.
MOLECULAR ECOLOGY (2008)
Lipolysis and glycerol gluconeogenesis in simultaneously fasting and lactating northern elephant seals
Dorian S. Houser et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2007)
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
Feng Chen et al.
PLOS ONE (2007)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh et al.
NATURE (2005)
Hormonal changes associated with the transition between nursing and natural fasting in northern elephant seals (Mirounga angustirostris)
RM Ortiz et al.
GENERAL AND COMPARATIVE ENDOCRINOLOGY (2003)
Using the transcriptome to annotate the genome
S Saha et al.
NATURE BIOTECHNOLOGY (2002)