4.8 Article

Recognition of Single-Point Mutation Using a Biological Nanopore

Journal

SMALL METHODS
Volume 4, Issue 11, Pages -

Publisher

WILEY-V C H VERLAG GMBH
DOI: 10.1002/smtd.202000101

Keywords

circulating-tumor DNA; liquid biopsy; nanopore sensing; single-point mutation

Funding

  1. KAKENHI [17K19138, 19H00901]
  2. MEXT, Japan
  3. Grants-in-Aid for Scientific Research [19H00901, 17K19138] Funding Source: KAKEN

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Here the recognition of a single-point mutation in oligonucleotides is described by using nanopore measurements. The translocation behavior of a series of mutated DNA strands, hybridized with a complementary DNA probe, is analyzed via blocking current and unzipping time. Discernment of the mutation position at the single nucleotide level is achieved by analysis of a 2D graph of the bootstrapped translocation data. The proposed approach provides a useful tool for the mutation detection of oligonucleotides secreted from tumor cells and is applicable in simple and label-free diagnoses as a nanopore liquid biopsy.

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