4.8 Article

Alternative polyadenylation mediates genetic regulation of gene expression

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

SNP2APA: a database for evaluating effects of genetic variants on alternative polyadenylation in human cancers

Yanbo Yang et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Genetics & Heredity

Annotation-free quantification of RNA splicing using LeafCutter

Yang I. Li et al.

NATURE GENETICS (2018)

Article Biochemistry & Molecular Biology

PolyA_DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes

Ruijia Wang et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Widespread intronic polyadenylation diversifies immune cell transcriptomes

Irtisha Singh et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Widespread intronic polyadenylation inactivates tumour suppressor genes in leukaemia

Shih-Han Lee et al.

NATURE (2018)

Article Biochemical Research Methods

QuantSeq 3′ mRNA sequencing for RNA quantification

Pamela Moll et al.

NATURE METHODS (2018)

Article Biotechnology & Applied Microbiology

QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data

Kevin C. H. Ha et al.

GENOME BIOLOGY (2018)

Review Cell Biology

Alternative polyadenylation of mRNA precursors

Bin Tian et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)

Article Genetics & Heredity

Estimating the causal tissues for complex traits and diseases

Halit Ongen et al.

NATURE GENETICS (2017)

Article Biochemistry & Molecular Biology

U1 snRNP telescripting regulates a size-function-stratified human genome

Jung-Min Oh et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

U1 snRNP telescripting regulates a size-function-stratified human genome

Jung-Min Oh et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemical Research Methods

Ribosome reinitiation can explain length-dependent translation of messenger RNA

David W. Rogers et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Review Biochemistry & Molecular Biology

Translational control of mRNAs by 3′-Untranslated region binding proteins

Akio Yamashita et al.

BMB REPORTS (2017)

Article Biochemical Research Methods

Fast and efficient QTL mapper for thousands of molecular phenotypes

Halit Ongen et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Coordination of RNA Polymerase II Pausing and 3 ' End Processing Factor Recruitment with Alternative Polyadenylation

Becky Fusby et al.

MOLECULAR AND CELLULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

William J. Astle et al.

Article Multidisciplinary Sciences

Defining the consequences of genetic variation on a proteome-wide scale

Joel M. Chick et al.

NATURE (2016)

Article Multidisciplinary Sciences

RNA splicing is a primary link between genetic variation and disease

Yang I. Li et al.

SCIENCE (2016)

Review Cell Biology

Evolution and Biological Roles of Alternative 3′UTRs

Christine Mayr

TRENDS IN CELL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

ELAV Links Paused Pol II to Alternative Polyadenylation in the Drosophila Nervous System

Katarzyna Oktaba et al.

MOLECULAR CELL (2015)

Article Genetics & Heredity

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

Brendan K. Bulik-Sullivan et al.

NATURE GENETICS (2015)

Article Biochemical Research Methods

WASP: allele-specific software for robust molecular quantitative trait locus discovery

Bryce van de Geijn et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma

Bhairavi Swaminathan et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Impact of regulatory variation from RNA to protein

Alexis Battle et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Genetics of rheumatoid arthritis contributes to biology and drug discovery

Yukinori Okada et al.

NATURE (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Transcriptome and genome sequencing uncovers functional variation in humans

Tuuli Lappalainen et al.

NATURE (2013)

Article Multidisciplinary Sciences

Identification of Genetic Variants That Affect Histone Modifications in Human Cells

Graham McVicker et al.

SCIENCE (2013)

Article Genetics & Heredity

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

Goo Jun et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2012)

Article Biochemistry & Molecular Biology

U1 snRNP Determines mRNA Length and Regulates Isoform Expression

Michael G. Berg et al.

Article Biochemistry & Molecular Biology

Statistical colocalization of monocyte gene expression and genetic risk variants for type 1 diabetes

Chris Wallace et al.

HUMAN MOLECULAR GENETICS (2012)

Article Multidisciplinary Sciences

DNase I sensitivity QTLs are a major determinant of human expression variation

Jacob F. Degner et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

An in-depth map of polyadenylation sites in cancer

Yuefeng Lin et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biochemistry & Molecular Biology

Alternative polyadenylation: New insights from global analyses

Yongsheng Shi

Editorial Material Biochemistry & Molecular Biology

Modernizing Reference Genome Assemblies

Deanna M. Church et al.

PLOS BIOLOGY (2011)

Article Multidisciplinary Sciences

U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

Daisuke Kaida et al.

NATURE (2010)

Article Multidisciplinary Sciences

Understanding mechanisms underlying human gene expression variation with RNA sequencing

Joseph K. Pickrell et al.

NATURE (2010)

Review Multidisciplinary Sciences

A haplotype map of the human genome

D Altshuler et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

A large-scale analysis of mRNA polyadenylation of human and mouse genes

B Tian et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

G Yeo et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Non-stop decay - a new mRNA surveillance pathway

S Vasudevan et al.

BIOESSAYS (2002)

Article Biochemistry & Molecular Biology

The human genome browser at UCSC

WJ Kent et al.

GENOME RESEARCH (2002)

Article Biochemistry & Molecular Biology

Patterns of variant polyadenylation signal usage in human genes

E Beaudoing et al.

GENOME RESEARCH (2000)