Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 33, Pages 19661-19663Publisher
NATL ACAD SCIENCES
DOI: 10.1073/pnas.2010506117
Keywords
nucleosome; NMR; structural biology; epigenetics; histone tail
Categories
Funding
- Ministry of Education, Culture, Sports, Science and Technology, Japan [07022019]
- Agency for Medical Research and Development, Japan [JP18am0101033, JP18am0101076]
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The structural unit of eukaryotic chromatin is a nucleosome, compris-ing two histone H2A-H2B heterodimers and one histone (H3-H4)2 tet-ramer, wrapped around by similar to 146 bp of DNA. The N-terminal flexible histone tails stick out from the histone core and have extensive post -translational modifications, causing epigenetic changes of chromatin. Although crystal and cryogenic electron microscopy structures of nu-cleosomes are available, the flexible tail structures remain elusive. Using NMR, we have examined the dynamics of histone H3 tails in nucleosomes containing unmodified and tetra-acetylated H4 tails. In unmodified nucleosome, the H3 tail adopts a dynamic equilib-rium structure between DNA-contact and reduced-contact states. In acetylated H4 nucleosome, however, the H3 tail equilibrium shifts to a mainly DNA-contact state with a minor reduced-contact state. The acetylated H4 tail is dynamically released from its own DNA-contact state to a reduced-contact state, while the H3 tail DNA-contact state becomes major. Notably, H3 K14 in the acety-lated H4 nucleosome is much more accessible to acetyltransferase Gcn5 relative to unmodified nucleosome, possibly due to the for-mation of a favorable H3 tail conformation for Gcn5. In summary, each histone tail adopts a characteristic dynamic state but regu-lates one other, probably creating a histone tail network even on a nucleosome.
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