4.7 Review

The host-associated archaeome

Related references

Note: Only part of the references are listed.
Review Ecology

Perspectives on Cultivation Strategies of Archaea

Yihua Sun et al.

MICROBIAL ECOLOGY (2020)

Review Microbiology

Molecular Hydrogen Metabolism: a Widespread Trait of Pathogenic Bacteria and Protists

Stephane L. Benoit et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2020)

Review Biotechnology & Applied Microbiology

Archaea, specific genetic traits, and development of improved bacterial live biotherapeutic products: another face of next-generation probiotics

Khaled Fadhlaoui et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2020)

Article Allergy

Intestinal archaea inversely associated with childhood asthma

David J. M. Barnett et al.

JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2019)

Article Multidisciplinary Sciences

A new genomic blueprint of the human gut microbiota

Alexandre Almeida et al.

NATURE (2019)

Article Microbiology

Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

Guillaume Borrel et al.

NATURE MICROBIOLOGY (2019)

Review Biochemistry & Molecular Biology

Insights into the physiology of ammonia-oxidizing microorganisms

Lisa Y. Stein

CURRENT OPINION IN CHEMICAL BIOLOGY (2019)

Article Infectious Diseases

Detection of Methanobrevibacter smithii in vaginal samples collected from women diagnosed with bacterial vaginosis

Ghiles Grine et al.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2019)

Article Medicine, General & Internal

Co-culture of Methanobrevibacter smithii with enterobacteria during urinary infection

Ghiles Grine et al.

EBIOMEDICINE (2019)

Article Multidisciplinary Sciences

Novel insights into plant-associated archaea and their functioning in arugula (Eruca sativa Mill.)

Julian Taffner et al.

JOURNAL OF ADVANCED RESEARCH (2019)

Review Physiology

Methane Production and Bioactivity-A Link to Oxido-Reductive Stress

Mihaly Boros et al.

FRONTIERS IN PHYSIOLOGY (2019)

Article Environmental Sciences

Global methane emissions from the human body: Past, present and future

Daniela Polag et al.

ATMOSPHERIC ENVIRONMENT (2019)

Article Microbiology

Exploring the Archaeome: Detection of Archaeal Signatures in the Human Body

Manuela R. Pausan et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Public, Environmental & Occupational Health

Nine Cases of Methanogenic Archaea in Refractory Sinusitis, an Emerging Clinical Entity

Elisabeth Sogodogo et al.

FRONTIERS IN PUBLIC HEALTH (2019)

Review Biochemistry & Molecular Biology

Versatile cell surface structures of archaea

Paushali Chaudhury et al.

MOLECULAR MICROBIOLOGY (2018)

Review Biotechnology & Applied Microbiology

Methanogens in humans: potentially beneficial or harmful for health

Prem Prashant Chaudhary et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Review Biochemistry & Molecular Biology

Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life

Cindy J. Castelle et al.

Article Microbiology

The genome of an endosymbiotic methanogen is very similar to those of its free-living relatives

R. A. Beinart et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia

Ashley A. Ross et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Review Biochemistry & Molecular Biology

Archaea Are Interactive Components of Complex Microbiomes

Christine Moissl-Eichinger et al.

TRENDS IN MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Peri-implantitis-associated methanogens: a preliminary report

Souad Belkacemi et al.

SCIENTIFIC REPORTS (2018)

Article Microbiology

Do Ruminal Ciliates Select Their Preys and Prokaryotic Symbionts?

Tansol Park et al.

FRONTIERS IN MICROBIOLOGY (2018)

Article Geochemistry & Geophysics

Planktonic Marine Archaea

Alyson E. Santoro et al.

Annual Review of Marine Science (2018)

Article Multidisciplinary Sciences

Termite mounds mitigate half of termite methane emissions

Philipp A. Nauer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Review Biochemistry & Molecular Biology

Pyrrolysine in archaea: a 22nd amino acid encoded through a genetic code expansion

Jean-Francois Brugere et al.

EMERGING TOPICS IN LIFE SCIENCES (2018)

Review Biochemistry & Molecular Biology

Archaea: forgotten players in the microbiome

Corinna Bang et al.

EMERGING TOPICS IN LIFE SCIENCES (2018)

Review Microbiology

The enigmatic archaeal virosphere

David Prangishvili et al.

NATURE REVIEWS MICROBIOLOGY (2017)

Article Multidisciplinary Sciences

Human age and skin physiology shape diversity and abundance of Archaea on skin

Christine Moissl-Eichinger et al.

SCIENTIFIC REPORTS (2017)

Article Gastroenterology & Hepatology

Colonic Transit Time Is a Driven Force of the Gut Microbiota Composition and Metabolism: In Vitro Evidence

William Tottey et al.

JOURNAL OF NEUROGASTROENTEROLOGY AND MOTILITY (2017)

Review Agriculture, Dairy & Animal Science

Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances

Amlan Patra et al.

JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY (2017)

Article Microbiology

Unexplored Archaeal Diversity in the Great Ape Gut Microbiome

Kasie Raymann et al.

MSPHERE (2017)

Article Immunology

Evidence of Archaeal Methanogens in Brain Abscess

Michel Drancourt et al.

CLINICAL INFECTIOUS DISEASES (2017)

Review Gastroenterology & Hepatology

Review article: inhibition of methanogenic archaea by statins as a targeted management strategy for constipation and related disorders

K. Gottlieb et al.

ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2016)

Article Biotechnology & Applied Microbiology

Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens

Kevin W. Becker et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Microbiology

Genetic Determinants of the Gut Microbiome in UK Twins

Julia K. Goodrich et al.

CELL HOST & MICROBE (2016)

Article Evolutionary Biology

Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

Guillaume Borrel et al.

GENOME BIOLOGY AND EVOLUTION (2016)

Article Genetics & Heredity

The effect of host genetics on the gut microbiome

Marc Jan Bonder et al.

NATURE GENETICS (2016)

Article Multidisciplinary Sciences

Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol

Evert C. Duin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Archaea catalyze iron-dependent anaerobic oxidation of methane

Katharina F. Ettwig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction

Silvan Scheller et al.

SCIENCE (2016)

Review Geosciences, Multidisciplinary

The global methane budget 2000-2012

Marielle Saunois et al.

EARTH SYSTEM SCIENCE DATA (2016)

Article Microbiology

Archaea in and on the Human Body: Health Implications and Future Directions

Mor N. Lurie-Weinberger et al.

PLOS PATHOGENS (2015)

Review Microbiology

The Role of Ciliate Protozoa in the Rumen

Charles J. Newbold et al.

FRONTIERS IN MICROBIOLOGY (2015)

Review Microbiology

Archaea associated with human surfaces: not to be underestimated

Corinna Bang et al.

FEMS MICROBIOLOGY REVIEWS (2015)

Article Agriculture, Dairy & Animal Science

Influence of rumen protozoa on methane emission in ruminants: a meta-analysis approach

J. Guyader et al.

ANIMAL (2014)

Article Biochemistry & Molecular Biology

Human Genetics Shape the Gut Microbiome

Julia K. Goodrich et al.

Review Microbiology

Ecology and characteristics of methanogenic archaea in animals and humans

Suwat Saengkerdsub et al.

CRITICAL REVIEWS IN MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

The archaellum: a rotating type IV pilus

Rajesh Shahapure et al.

MOLECULAR MICROBIOLOGY (2014)

Review Microbiology

Carbohydrate Metabolism in Archaea: Current Insights into Unusual Enzymes and Pathways and Their Regulation

Christopher Braesen et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2014)

Article Gastroenterology & Hepatology

Archaea and the human gut: New beginning of an old story

Nadia Gaci et al.

WORLD JOURNAL OF GASTROENTEROLOGY (2014)

Article Microbiology

Biofilm formation of mucosa-associated methanoarchaeal strains

Corinna Bang et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Immunology

Methanogenic archaea in subgingival sites: a review

Tung Nguyen-Hieu et al.

APMIS (2013)

Article Virology

First Insights into the Entry Process of Hyperthermophilic Archaeal Viruses

Emmanuelle R. J. Quemin et al.

JOURNAL OF VIROLOGY (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Animals in a bacterial world, a new imperative for the life sciences

Margaret McFall-Ngai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Editorial Material Immunology

Role of archaea in human disease

Rustam I. Aminov

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2013)

Article Microbiology

Effects of Antimicrobial Peptides on Methanogenic Archaea

C. Bang et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)

Article Nutrition & Dietetics

Rumen protozoa and methanogenesis: not a simple cause-effect relationship

Diego P. Morgavi et al.

BRITISH JOURNAL OF NUTRITION (2012)

Article Biotechnology & Applied Microbiology

Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen

Mor N. Lurie-Weinberger et al.

GENOMICS (2012)

Article Microbiology

Methanomassiliicoccus luminyensis gen. nov., sp nov., a methanogenic archaeon isolated from human faeces

Bedis Dridi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)

Review Microbiology

The keystone-pathogen hypothesis

George Hajishengallis et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Environmental Sciences

Hydrogenotrophic microbiota distinguish native Africans from African and European Americans

Gerardo M. Nava et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2012)

Review Microbiology

Archaea as emerging organisms in complex human microbiomes

Bedis Dridi et al.

ANAEROBE (2011)

Article Biochemistry & Molecular Biology

The proportional lack of archaeal pathogens: Do viruses/phages hold the key?

Erin E. Gill et al.

BIOESSAYS (2011)

Review Microbiology

Novel metabolic pathways in Archaea

Takaaki Sato et al.

CURRENT OPINION IN MICROBIOLOGY (2011)

Review Microbiology

Functional context, biosynthesis, and genetic encoding of pyrrolysine

Marsha A. Gaston et al.

CURRENT OPINION IN MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

Zeneng Wang et al.

NATURE (2011)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Editorial Material Microbiology

Microbiology by numbers

[Anonymous]

NATURE REVIEWS MICROBIOLOGY (2011)

Review Microbiology

The archaeal cell envelope

Sonja-Verena Albers et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Immunogenic Properties of Archaeal Species Found in Bioaerosols

Pascale Blais Lecours et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Evolutionary transitions in bacterial symbiosis

Joel L. Sachs et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

Elizabeth E. Hansen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Gastroenterology & Hepatology

Methanogenic Flora Is Associated With Altered Colonic Transit but Not Stool Characteristics in Constipation Without IBS

Ashok Attaluri et al.

AMERICAN JOURNAL OF GASTROENTEROLOGY (2010)

Article Agriculture, Dairy & Animal Science

Microbial ecosystem and methanogenesis in ruminants

D. P. Morgavi et al.

ANIMAL (2010)

Article Microbiology

Halophilic archaea in the human intestinal mucosa

Andrew P. A. Oxley et al.

ENVIRONMENTAL MICROBIOLOGY (2010)

Article Ecology

Global ecological patterns in uncultured Archaea

Jean-Christophe Auguet et al.

ISME JOURNAL (2010)

Article Environmental Sciences

Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity

Agnes Mihajlovski et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2010)

Article Microbiology

Methanogenic archaea in health and disease: A novel paradigm of microbial pathogenesis

Everly Conway de Macario et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2009)

Review Microbiology

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

Alfons J. M. Stams et al.

NATURE REVIEWS MICROBIOLOGY (2009)

Article Biochemistry & Molecular Biology

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

Zarraz May-Ping Lee et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Dentistry, Oral Surgery & Medicine

Community as the unit of pathogenicity: An emerging concept as to the microbial pathogenesis of apical periodontitis

Jose F. Siqueira et al.

ORAL SURGERY ORAL MEDICINE ORAL PATHOLOGY ORAL RADIOLOGY AND ENDODONTOLOGY (2009)

Review Environmental Sciences

The global methane cycle: recent advances in understanding the microbial processes involved

Ralf Conrad

ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)

Article Microbiology

Bacterial, Archaeal, and Eukaryal Diversity in the Intestines of Korean People

Young-Do Nam et al.

JOURNAL OF MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

Brian V. Jones et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Microbiology

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution

Ilana Zilber-Rosenberg et al.

FEMS MICROBIOLOGY REVIEWS (2008)

Article Multidisciplinary Sciences

Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut

Buck S. Samuel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Microbiology

The role of microorganisms in coral health, disease and evolution

Eugene Rosenberg et al.

NATURE REVIEWS MICROBIOLOGY (2007)

Article Gastroenterology & Hepatology

The degree of breath methane production in IBS correlates with the severity of constipation

Soumya Chatterjee et al.

AMERICAN JOURNAL OF GASTROENTEROLOGY (2007)

Article Nutrition & Dietetics

Why do African Americans get more colon cancer than native Africans?

Stephen J. D. O'Keefe et al.

JOURNAL OF NUTRITION (2007)

Review Microbiology

Adaptations to energy stress dictate the ecology and evolution of the Archaea

David L. Valentine

NATURE REVIEWS MICROBIOLOGY (2007)

Article Multidisciplinary Sciences

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

Steven J. Hallam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Archaea predominate among ammonia-oxidizing prokaryotes in soils

S. Leininger et al.

NATURE (2006)

Article Biotechnology & Applied Microbiology

Carriage, quantification, and predominance of methanogens and sulfate-reducing bacteria in faecal samples

J. A. Stewart et al.

LETTERS IN APPLIED MICROBIOLOGY (2006)

Article Gastroenterology & Hepatology

Methane, a gas produced by enteric bacteria, slows intestinal transit and augments small intestinal contractile activity

Mark Pimentel et al.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2006)

Review Gastroenterology & Hepatology

Stability of human methanogenic flora over 35 years and a review of insights obtained from breath methane measurements

MD Levitt et al.

CLINICAL GASTROENTEROLOGY AND HEPATOLOGY (2006)

Review Microbiology

Genomic studies of uncultivated archaea

C Schleper et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Methanogenic Archaea and human periodontal disease

PW Lepp et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Pathogenic archaea: do they exist?

R Cavicchioli et al.

BIOESSAYS (2003)

Review Immunology

Archaea and their potential role in human disease

PB Eckburg et al.

INFECTION AND IMMUNITY (2003)

Article Multidisciplinary Sciences

Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA

G Srinivasan et al.

SCIENCE (2002)

Article Biochemistry & Molecular Biology

Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates

AHAM van Hoek et al.

MOLECULAR BIOLOGY AND EVOLUTION (2000)