4.5 Article

The complete chloroplast genome and characteristics analysis ofCallistemon rigidusR.Br.

Journal

MOLECULAR BIOLOGY REPORTS
Volume 47, Issue 7, Pages 5013-5024

Publisher

SPRINGER
DOI: 10.1007/s11033-020-05567-4

Keywords

Callistemon rigidus R; Br; Traditional Chinese medicine; Chloroplast genome; Phylogeny

Funding

  1. start-up foundation of introducing talents for scientific research, Nanjing Institute of Industry Technology [201050619YK701]
  2. start-up foundation of Nanjing Forestry University [163108059]

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Callistemon rigidus R.Br. one of the traditional Chinese medicinal plants, is acrid-flavored and mild-natured, with the prominent effects reducing swelling, resolving phlegm, and dispelling rheumatism. Clinically, it has been commonly used to treat cold, cough and asthma, pain and swelling from impact injuries, eczema, rheumatic arthralgia. The chloroplast genome study onCallistemon rigidus R.Br. is a few seen. This study demonstrates the data collected from the assembly and annotation of the chloroplast (cp) genome ofCallistemon rigidus R.Br., followed by furthers comparative analysis with the cp genomes of closely related species.C. rigidusR.Br. showed a cp genome in the size of 158, 961 bp long with 36.78% GC content, among which a pair of inverted repeats (IRs) of 26, 671 bp separated a large single-copy (LSC) region of 87, 162 bp and a small single-copy (SSC) region of 18, 457 bp. Altogether 131 genes were hosted, including 37 transfer RNAs, 8 ribosomal RNAs, and 86 protein-coding genes. 284 simple sequence repeats (SSRs) were also marked out. A comparative analysis of the genome structure and the sequence data of closely related species unveiled the conserved gene order in the IR and LSC/SSC regions, a quite constructive finding for future phylogenetic research. Overall, this study providingC. rigidusR.Br. genomic resources could positively contribute to the evolutionary study and the phylogenetic reconstruction of Myrtaceae.

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