4.7 Article

Modern epigenetics methods in biological research

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

A novel DNA methylation motif identified in Bacillus pumilus BA06 and possible roles in the regulation of gene expression

Gang Liu et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2020)

Article Biochemistry & Molecular Biology

Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing

Povilas Gibas et al.

PLOS BIOLOGY (2020)

Review Medicine, Research & Experimental

Genome-wide methods for investigating long noncoding RNAs

Mei Cao et al.

BIOMEDICINE & PHARMACOTHERAPY (2019)

Review Genetics & Heredity

A (3D-Nuclear) Space Odyssey: Making Sense of Hi-C Maps

Irene Mota-Gomez et al.

GENES (2019)

Review Genetics & Heredity

Coding or Noncoding, the Converging Concepts of RNAs

Jing Li et al.

FRONTIERS IN GENETICS (2019)

Article Biochemical Research Methods

Predicting three-dimensional genome organization with chromatin states

Yifeng Qi et al.

PLOS COMPUTATIONAL BIOLOGY (2019)

Article Biochemical Research Methods

Joint profiling of DNA methylation and chromatin architecture in single cells

Guoqiang Li et al.

NATURE METHODS (2019)

Review Biochemistry & Molecular Biology

The Role of Non-coding RNAs in Oncology

Frank J. Slack et al.

Review Biochemistry & Molecular Biology

Latest techniques to study DNA methylation

Quentin Gouil et al.

DNA METHYLATION (2019)

Review Biochemistry & Molecular Biology

Nucleosome structure and dynamics are coming of age

Keda Zhou et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)

Review Mathematical & Computational Biology

Non-Coding RNAs and their Integrated Networks

Peijing Zhang et al.

JOURNAL OF INTEGRATIVE BIOINFORMATICS (2019)

Article Biochemical Research Methods

BS-Seeker3: ultrafast pipeline for bisulfite sequencing

Kevin Yu Yuan Huang et al.

BMC BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA)

Julien Richard Albert et al.

BMC GENOMICS (2018)

Review Biotechnology & Applied Microbiology

Single-Cell DNA Methylation Profiling: Technologies and Biological Applications

Ino D. Karemaker et al.

TRENDS IN BIOTECHNOLOGY (2018)

Review Biochemistry & Molecular Biology

Mass Spectrometry-Based Proteomics to Unveil the Non-coding RNA World

Roberto Giambruno et al.

FRONTIERS IN MOLECULAR BIOSCIENCES (2018)

Review Cell Biology

Single Cell Multi-Omics Technology: Methodology and Application

Youjin Hu et al.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2018)

Review Biochemical Research Methods

How best to identify chromosomal interactions: a comparison of approaches

James O. J. Davies et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Mapping DNA methylation with high-throughput nanopore sequencing

Arthur C. Rand et al.

NATURE METHODS (2017)

Review Genetics & Heredity

TET-mediated active DNA demethylation: mechanism, function and beyond

Xiaoji Wu et al.

NATURE REVIEWS GENETICS (2017)

Article Multidisciplinary Sciences

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

Michele Di Pierro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Genetics & Heredity

Three-dimensional genome architecture and emerging technologies: looping in disease

Arpit Mishra et al.

GENOME MEDICINE (2017)

Review Multidisciplinary Sciences

How do lncRNAs regulate transcription?

Yicheng Long et al.

SCIENCE ADVANCES (2017)

Article Biochemistry & Molecular Biology

Global Mapping of Human RNA-RNA Interactions

Eesha Sharma et al.

MOLECULAR CELL (2016)

Review Genetics & Heredity

A network-biology perspective of microRNA function and dysfunction in cancer

Cameron P. Bracken et al.

NATURE REVIEWS GENETICS (2016)

Review Biochemistry & Molecular Biology

Nucleic Acid Modifications in Regulation of Gene Expression

Kai Chen et al.

CELL CHEMICAL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

N6-Methyladenine DNA Modification in Drosophila

Guoqiang Zhang et al.

Article Biochemical Research Methods

WASP: allele-specific software for robust molecular quantitative trait locus discovery

Bryce van de Geijn et al.

NATURE METHODS (2015)

Review Genetics & Heredity

Single-cell epigenomics: techniques and emerging applications

Omer Schwartzman et al.

NATURE REVIEWS GENETICS (2015)

Review Genetics & Heredity

RNA-mediated epigenetic regulation of gene expression

Daniel Holoch et al.

NATURE REVIEWS GENETICS (2015)

Article Multidisciplinary Sciences

Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes

John Beaulaurier et al.

NATURE COMMUNICATIONS (2015)

Review Biochemistry & Molecular Biology

A Tale of Chromatin and Transcription in 100 Structures

Patrick Cramer

Article Biochemical Research Methods

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

Sebastien A. Smallwood et al.

NATURE METHODS (2014)

Review Genetics & Heredity

Long non-coding RNAs: new players in cell differentiation and development

Alessandro Fatica et al.

NATURE REVIEWS GENETICS (2014)

Review Genetics & Heredity

High-resolution digital profiling of the epigenome

Gabriel E. Zentner et al.

NATURE REVIEWS GENETICS (2014)

Review Genetics & Heredity

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

Marjori A. Matzke et al.

NATURE REVIEWS GENETICS (2014)

Article Biochemical Research Methods

Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine

Michael J. Booth et al.

NATURE PROTOCOLS (2013)

Article Multidisciplinary Sciences

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA

Andrew H. Laszlo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells

Patrick J. Murphy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome

Miao Yu et al.

Review Genetics & Heredity

MicroRNA profiling: approaches and considerations

Colin C. Pritchard et al.

NATURE REVIEWS GENETICS (2012)

Review Genetics & Heredity

Functions of DNA methylation: islands, start sites, gene bodies and beyond

Peter A. Jones

NATURE REVIEWS GENETICS (2012)

Review Genetics & Heredity

Analysing and interpreting DNA methylation data

Christoph Bock

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging

Fumihito Miura et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biotechnology & Applied Microbiology

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Kasper D. Hansen et al.

GENOME BIOLOGY (2012)

Article Biochemical Research Methods

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

Felix Krueger et al.

BIOINFORMATICS (2011)

Review Cell Biology

Regulation of chromatin by histone modifications

Andrew J. Bannister et al.

CELL RESEARCH (2011)

Article Biotechnology & Applied Microbiology

High density DNA methylation array with single CpG site resolution

Marina Bibikova et al.

GENOMICS (2011)

Article Biochemistry & Molecular Biology

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

Ci Chu et al.

MOLECULAR CELL (2011)

Review Cell Biology

PIWI-interacting small RNAs: the vanguard of genome defence

Mikiko C. Siomi et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)

Article Multidisciplinary Sciences

The genomic binding sites of a noncoding RNA

Matthew D. Simon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Editorial Material Genetics & Heredity

The hunt for 5-hydroxymethylcytosine: the sixth base

Chun-Xiao Song et al.

EPIGENOMICS (2011)

Article Genetics & Heredity

Evaluation of the Infinium Methylation 450K technology

Sarah Dedeurwaerder et al.

EPIGENOMICS (2011)

Article Biochemistry & Molecular Biology

A window into third-generation sequencing

Eric E. Schadt et al.

HUMAN MOLECULAR GENETICS (2010)

Review Biochemistry & Molecular Biology

The Current State of Chromatin Immunoprecipitation

Philippe Collas

MOLECULAR BIOTECHNOLOGY (2010)

Article Mathematical & Computational Biology

Computational Epigenetics: the new scientific paradigm

Shen Jean Lim et al.

BIOINFORMATION (2010)

Review Biochemistry & Molecular Biology

Histone modifying enzymes: Structures, mechanisms, and specificities

Ronen Marmorstein et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2009)

Article Multidisciplinary Sciences

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

Sung Wook Chi et al.

NATURE (2009)

Article Multidisciplinary Sciences

Real-Time DNA Sequencing from Single Polymerase Molecules

John Eid et al.

SCIENCE (2009)

Review Medicine, General & Internal

Epigenetic Cross-Talk between DNA Methylation and Histone Modifications in Human Cancers

Yutaka Kondo

YONSEI MEDICAL JOURNAL (2009)

Article Biochemistry & Molecular Biology

Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies

Diane P. Genereux et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)

Review Multidisciplinary Sciences

The complex language of chromatin regulation during transcription

Shelley L. Berger

NATURE (2007)

Review Biochemistry & Molecular Biology

Chromatin modifications and their function

Tony Kouzarides

Review Biochemistry & Molecular Biology

Epigenetics A Historical Overview

Robin Holliday

EPIGENETICS (2006)

Article Biochemistry & Molecular Biology

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

A Meissner et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

MSRE-PCR for analysis of gene-specific DNA methylation

AA Melnikov et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Multidisciplinary Sciences

Epigenetics in human disease and prospects for epigenetic therapy

G Egger et al.

NATURE (2004)

Review Genetics & Heredity

DNA methylation in health and disease

KD Robertson et al.

NATURE REVIEWS GENETICS (2000)