Related references
Note: Only part of the references are listed.CONSISTENCY AND CONVERGENCE RATE OF PHYLOGENETIC INFERENCE VIA REGULARIZATION
Vu Dinh et al.
ANNALS OF STATISTICS (2018)
Nextstrain: real-time tracking of pathogen evolution
James Hadfield et al.
BIOINFORMATICS (2018)
PhyloGeoTool: interactively exploring large phylogenies in an epidemiological context
Pieter Libin et al.
BIOINFORMATICS (2017)
SUPPORT RECOVERY WITHOUT INCOHERENCE: A CASE FOR NONCONVEX REGULARIZATION
Po-Ling Loh et al.
ANNALS OF STATISTICS (2017)
STATISTICAL CONSISTENCY AND ASYMPTOTIC NORMALITY FOR HIGH-DIMENSIONAL ROBUST M-ESTIMATORS
Po-Ling Loh
ANNALS OF STATISTICS (2017)
Projected Iterative Soft-Thresholding Algorithm for Tight Frames in Compressed Sensing Magnetic Resonance Imaging
Yunsong Liu et al.
IEEE TRANSACTIONS ON MEDICAL IMAGING (2016)
nextflu: real-time tracking of seasonal influenza virus evolution in humans
Richard A. Neher et al.
BIOINFORMATICS (2015)
Relaxed sparse eigenvalue conditions for sparse estimation via non-convex regularized regression
Zheng Pan et al.
PATTERN RECOGNITION (2015)
Phycas: Software for Bayesian Phylogenetic Analysis
Paul O. Lewis et al.
SYSTEMATIC BIOLOGY (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Tests for Two Trees Using Likelihood Methods
Edward Susko
MOLECULAR BIOLOGY AND EVOLUTION (2014)
The promise and challenge of high-throughput sequencing of the antibody repertoire
George Georgiou et al.
NATURE BIOTECHNOLOGY (2014)
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration
Alexandra Gavryushkina et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
CALIBRATING NONCONVEX PENALIZED REGRESSION IN ULTRA-HIGH DIMENSION
Lan Wang et al.
ANNALS OF STATISTICS (2013)
Germinal Centers
Gabriel D. Victora et al.
ANNUAL REVIEW OF IMMUNOLOGY, VOL 30 (2012)
The LANL hemorrhagic fever virus database, a new platform for analyzing biothreat viruses
Carla Kuiken et al.
NUCLEIC ACIDS RESEARCH (2012)
A Unified Framework for High-Dimensional Analysis of M-Estimators with Decomposable Regularizers
Sahand N. Negahban et al.
STATISTICAL SCIENCE (2012)
A General Theory of Concave Regularization for High-Dimensional Sparse Estimation Problems
Cun-Hui Zhang et al.
STATISTICAL SCIENCE (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
SparseNet: Coordinate Descent With Nonconvex Penalties
Rahul Mazumder et al.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2011)
SIMULTANEOUS ANALYSIS OF LASSO AND DANTZIG SELECTOR
Peter J. Bickel et al.
ANNALS OF STATISTICS (2009)
LASSO-TYPE RECOVERY OF SPARSE REPRESENTATIONS FOR HIGH-DIMENSIONAL DATA
Nicolai Meinshausen et al.
ANNALS OF STATISTICS (2009)
A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems
Amir Beck et al.
SIAM JOURNAL ON IMAGING SCIENCES (2009)
Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
Elizabeth S. Allman et al.
ADVANCES IN APPLIED PROBABILITY (2008)
Discussion:: One-step sparse estimates in nonconcave penalized likelihood models
Peter Buehlmann et al.
ANNALS OF STATISTICS (2008)
The sparsity and bias of the lasso selection in high-dimensional linear regression
Cun-Hui Zhang et al.
ANNALS OF STATISTICS (2008)
One-step sparse estimates in nonconcave penalized likelihood models
Hui Zou et al.
ANNALS OF STATISTICS (2008)
The evolutionary dynamics of human influenza B virus
Rubing Chen et al.
JOURNAL OF MOLECULAR EVOLUTION (2008)
Smoothly Clipped Absolute Deviation on High Dimensions
Yongdai Kim et al.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2008)
Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
Elizabeth S. Allman et al.
MATHEMATICAL BIOSCIENCES (2008)
Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap
Junhyong Kim et al.
SYSTEMATIC BIOLOGY (2008)
The adaptive lasso and its oracle properties
Hui Zou
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2006)
High-dimensional graphs and variable selection with the Lasso
Nicolai Meinshausen et al.
ANNALS OF STATISTICS (2006)
Variable selection using MM algorithms
DR Hunter et al.
ANNALS OF STATISTICS (2005)
Polytomies and Bayesian phylogenetic inference
PO Lewis et al.
SYSTEMATIC BIOLOGY (2005)
Signal recovery by proximal forward-backward splitting
PL Combettes et al.
MULTISCALE MODELING & SIMULATION (2005)
Unifying the epidemiological and evolutionary dynamics of pathogens
BT Grenfell et al.
SCIENCE (2004)
Modeling compositional heterogeneity
PG Foster
SYSTEMATIC BIOLOGY (2004)
Estimating hypermutation rates from clonal tree data
SH Kleinstein et al.
JOURNAL OF IMMUNOLOGY (2003)
Variable selection via nonconcave penalized likelihood and its oracle properties
JQ Fan et al.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2001)
Likelihood-based tests of topologies in phylogenetics
N Goldman et al.
SYSTEMATIC BIOLOGY (2000)