4.6 Article

Cell Type- and Stimulation-Dependent Transcriptional Programs Regulated by Atg16L1 and Its Crohn's Disease Risk Variant T300A

Related references

Note: Only part of the references are listed.
Article Gastroenterology & Hepatology

Regulation of interferon signaling in response to gut microbes by autophagy

Patricia K. Martin et al.

GUT MICROBES (2020)

Article Multidisciplinary Sciences

Decoy exosomes provide protection against bacterial toxins

Matthew D. Keller et al.

NATURE (2020)

Review Multidisciplinary Sciences

Pathway paradigms revealed from the genetics of inflammatory bowel disease

Daniel B. Graham et al.

NATURE (2020)

Article Multidisciplinary Sciences

The CH25H-CYP7B1-RORα axis of cholesterol metabolism regulates osteoarthritis

Wan-Su Choi et al.

NATURE (2019)

Article Multidisciplinary Sciences

Physical and functional interaction between A20 and ATG16L1-WD40 domain in the control of intestinal homeostasis

Karolina Slowicka et al.

NATURE COMMUNICATIONS (2019)

Article Immunology

Selective autophagy of the adaptor TRIF regulates innate inflammatory signaling

Mohammad Samie et al.

NATURE IMMUNOLOGY (2018)

Article Multidisciplinary Sciences

Crystal structure of the mammalian lipopolysaccharide detoxifier

Alexei Gorelik et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

Transcription factors NRF2 and HSF1 have opposing functions in autophagy

Sharadha Dayalan Naidu et al.

SCIENTIFIC REPORTS (2017)

Article Medicine, Research & Experimental

LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients

Ta-Chiang Liu et al.

JCI INSIGHT (2017)

Article Biochemistry & Molecular Biology

The Reactome pathway Knowledgebase

Antonio Fabregat et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

variancePartition: interpreting drivers of variation in complex gene expression studies

Gabriel E. Hoffman et al.

BMC BIOINFORMATICS (2016)

Article Multidisciplinary Sciences

The T300A Crohn's disease risk polymorphism impairs function of the WD40 domain of ATG16L1

Emilio Boada-Romero et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

Elucidating Compound Mechanism of Action by Network Perturbation Analysis

Jung Hoon Woo et al.

Article Biochemistry & Molecular Biology

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin et al.

Review Gastroenterology & Hepatology

Autophagy and checkpoints for intracellular pathogen defense

Geraldine L. C. Paulus et al.

CURRENT OPINION IN GASTROENTEROLOGY (2015)

Review Biochemistry & Molecular Biology

Paving the way for adequate myelination: The contribution of galectin-3, transferrin and iron

Paula G. Franco et al.

FEBS LETTERS (2015)

Article Multidisciplinary Sciences

Small-molecule enhancers of autophagy modulate cellular disease phenotypes suggested by human genetics

Szu-Yu Kuoa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Dynamic profiling of the protein life cycle in response to pathogens

Marko Jovanovic et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

TRRUST: a reference database of human transcriptional regulatory interactions

Heonjong Han et al.

SCIENTIFIC REPORTS (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Gastroenterology & Hepatology

Genomic ATG16L1 risk allele-restricted Paneth cell ER stress in quiescent Crohn's disease

J. Jasper Deuring et al.

Article Multidisciplinary Sciences

A Crohn's disease variant in Atg16l1 enhances its degradation by caspase 3

Aditya Murthy et al.

NATURE (2014)

Article Multidisciplinary Sciences

Altered inactivation of commensal LPS due to acyloxyacyl hydrolase deficiency in colonic dendritic cells impairs mucosal Th17 immunity

Brian M. Janelsins et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense

Kara G. Lassen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Hematology

LITAF, a BCL6 target gene, regulates autophagy in mature B-cell lymphomas

Cristina Bertolo et al.

BRITISH JOURNAL OF HAEMATOLOGY (2013)

Article Biochemistry & Molecular Biology

TMEM59 defines a novel ATG16L1-binding motif that promotes local activation of LC3

Emilio Boada-Romero et al.

EMBO JOURNAL (2013)

Article Biochemistry & Molecular Biology

Autolysosomal β-catenin degradation regulates Wnt-autophagy-p62 crosstalk

Katy J. Petherick et al.

EMBO JOURNAL (2013)

Article Biochemistry & Molecular Biology

Galectin-3 Guides Intracellular Trafficking of Some Human Serotransferrin Glycoforms

Michael C. Carlsson et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Immunology

Canonical and Noncanonical Wnt Proteins Program Dendritic Cell Responses for Tolerance

Cecilia Oderup et al.

JOURNAL OF IMMUNOLOGY (2013)

Article Multidisciplinary Sciences

Paneth cells as a site of origin for intestinal inflammation

Timon E. Adolph et al.

NATURE (2013)

Review Multidisciplinary Sciences

Metabolism of inflammation limited by AMPK and pseudo-starvation

Luke A. J. O'Neill et al.

NATURE (2013)

Article Biotechnology & Applied Microbiology

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

Irit Gat-Viks et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Simone Picelli et al.

NATURE METHODS (2013)

Review Nutrition & Dietetics

Influence of microRNA on the Maintenance of Human Iron Metabolism

McKale Davis et al.

NUTRIENTS (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Review Immunology

Autophagy and the Immune System

Petric Kuballa et al.

ANNUAL REVIEW OF IMMUNOLOGY, VOL 30 (2012)

Article Biochemical Research Methods

RSeQC: quality control of RNA-seq experiments

Liguo Wang et al.

BIOINFORMATICS (2012)

Editorial Material Hematology

Notch and PI3K: how is the road traveled?

Will Bailis et al.

BLOOD (2012)

Article Biochemistry & Molecular Biology

Camera: a competitive gene set test accounting for inter-gene correlation

Di Wu et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways

Michela Palmieri et al.

HUMAN MOLECULAR GENETICS (2011)

Article Multidisciplinary Sciences

TLR signalling augments macrophage bactericidal activity through mitochondrial ROS

A. Phillip West et al.

NATURE (2011)

Review Multidisciplinary Sciences

Autophagy in immunity and inflammation

Beth Levine et al.

NATURE (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Cell Biology

Mammalian autophagy: core molecular machinery and signaling regulation

Zhifen Yang et al.

CURRENT OPINION IN CELL BIOLOGY (2010)

Article Immunology

Lack of galectin-3 alleviates trypanosomiasis-associated anemia of inflammation

Vankrunkelsven Ann et al.

IMMUNOBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

A scaling normalization method for differential expression analysis of RNA-seq data

Mark D. Robinson et al.

GENOME BIOLOGY (2010)

Review Immunology

The regulation of inflammation by galectin-3

Neil C. Henderson et al.

IMMUNOLOGICAL REVIEWS (2009)

Review Immunology

Autophagy genes in immunity

Herbert W. Virgin et al.

NATURE IMMUNOLOGY (2009)

Article Cell Biology

LAMP-2 - A control step for phagosome and autophagosome maturation

Paul Saftig et al.

AUTOPHAGY (2008)

Review Biochemistry & Molecular Biology

Cathepsin E: A mini review

Nousheen Zaidi et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Article Multidisciplinary Sciences

Loss of the autophagy protein Atg16L1 enhances endotoxin-induced IL-1β production

Tatsuya Saitoh et al.

NATURE (2008)

Article Genetics & Heredity

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease

Steven A. McCarroll et al.

NATURE GENETICS (2008)

Article Immunology

A critical role for the autophagy gene Atg5 in T cell survival and proliferation

Heather H. Pua et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2007)

Article Biochemistry & Molecular Biology

Modeling the tertiary structure of human cathepsin-E

KC Chou

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)

Article Biochemistry & Molecular Biology

On the role of galectin-3 in cancer apoptosis

S Nakahara et al.

APOPTOSIS (2005)

Article Immunology

Cathepsin D is up-regulated in inflammatory bowel disease macrophages

M Hausmann et al.

CLINICAL AND EXPERIMENTAL IMMUNOLOGY (2004)

Article Biochemistry & Molecular Biology

Galectin-3 and metastasis

Y Takenaka et al.

GLYCOCONJUGATE JOURNAL (2002)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)